Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4796 ATGCCGCTTCCGACGAAACCAATGAAGCCACTACATGAAACCGGCAGAGACTCCGAGGAATCGGCGACTCCTTCCAATAACCTATGGGTTGGAAATCTAACGCCGGATGTTTCCGATTCCGATCTGATGAACCTTTTCGCTCAATACGGCGCACTCGATAGCGTCACCTCTTATTCCGCTCGCAGTTACGCTTTCGTCTTCTTCAAACGCGTTGAAGATGCAAAAGCCGCTAAAAACGCGCTTCAAGGATTCCATTTTCGCGGCAATTCATTGAAAATTGAGTTTGCTAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGCATTAACCCAGCTGTTACAAAGGAAGACTTAGAAGCCGATTTCCGTAAATTTGGTAAAATTGAGGATTACAAGTTCCTCAGAGACAAAAATACTGCATGTGTTGAATTTTTCAATCTGGACGATGCTATTCAGGCAATGAAAATCATGAATGGAAAACGTATTGGTGGGGAAAATATTCGTGTTGACTTCCTCCGTTCAAATTCTACAAGAAAAGATCAATTGCTTGATCATGGGCAATTCCAAGGAAAAAGCTTAGGGCCTACTGATTTCTATTCTGGACAAAAAAGGCCACTGAATTCACAACCTCAAACGGGGAGGAAGGGTGATGGTCAACCCAGTAATATTTTGTGGATTGGTTATCCTCCCAATGTTCAGATTGATGAGCAAATGCTACACAATGCCATGATTCTATTTGGTGAAATTGAGAGAATCAGGAGTTTTCCTTCAAGGCATTATTCATTTGTTGAATTTAGAAGTGTTGATGAAGCCCGACGTGCAAAAGAGGGCCTCCAAGGACGCCTTTTTAATGATCCTCGCATAACAATCAATTATTCAAACGGTGACCAGGTACACGGCAAAGATTACCCTGGCTTCTATCCTGGTAGTAAAGGGCCACGACCTGATTTATTCCTAAATGAGCATCCACATCGACCGTTACAAATGGATTTATTTGGTCATAATCGTCCTATGATTCCAAATAATTTTCCTGGACAGTTGTCAACTGGCGGTATTGTTGGTCCAAACATGCCAATGCGGCCTTTTGGTCCACAAGTTGGTCCAGAATCTGTTTTTTCTGGCCCTGATTTTAACGAGAGCAGTACATTACACCAATTTCAGGATAGTAGCTTGACAAATAAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGTTGCTTTCTTCTCCTGCAACGGGTGCTAGGCTTCCTGTAAGATCAGCTTCTGGTGCATGGGATGTACTTGACGTAAACAACATTTCAAGAGATTCTAAGCGGTCTAGGATAGATGCTACATTACCTAATGATGATGCTCCATATGGTGACATTCATGGAAGGGGTATTCTTGGTCCAGGAAGCACAAGGATAACAGGTGGAGTCCATCCTTCTGTCCAACCTGGTGATATGGATCATATATGGCGTGGACTTATTGCAAAAGGAGGATCTCCTGTTTGTCATGCTAGATGCATCCCTATAGGGAAAGGGATAGGGGCAGAGCTTCCGGAAGTTGTTGATTGCTCAGCTAGGACGGGATTGGATGTACTCGCAAAACACTATGCTGATGCAATTGACTTTGAGATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTTCAGCGTACACTGAATTCTTACGCTACCTTGGTGCAAAAAACCGTGCTGGTGTTGCCAAATTTGGCAATACAACTTTGTTCTTGGTACCTCCTTCTGATTTCCTGACAAAAGTTTTGAAAGTCAATGGACCTGAACGTTTATATGGCGTCGTTCTCAAGTTTGCACCAGTCCCAAATGGTGTGCCCATGCACCACTCTTCACAAATGCCTACACCATCGCCAAATCAATATATGCAGCAGTTTCCTCCTTCACAGGCTGAATATGATATGAATCCTGCAAAGGATGATCAGGTTTTGCCCATGGACTACAACAGAATGTTGCATGAAGATTCTAAGCTTCCTGCTAAGCAAGTATATCCACCTATAGGTGGGCCTTCAGTTCAATCCGCAGCTCCAGATTATGCTCCAAATACTGCTTCTGGGTCTCAAGCTGGAGTCGCATTAACACCTGAGCTTATTGCGACTTTAGCTTCTTTTCTTCCAACAAATGCGCAATCATCTGCTACTAATGGTGCCAAGTCGGCTGTAGGCTCCTCAACTGTAAGGCCTCCATTTCCTCCTGTGGCTCCTAATGATGGAAACCAATCTCAATTATGGAAACAGGATCATCAAATTGCAGATCAATCCATTCATCCACCTCAGCAGTTTAGGAATATGTATAACAATCACAATACTCATTTTCAGCCTTATCCACCAGCATCAGCTCCTGGTCACACTTCCCAAGTGTTCTCTGGAAGTTCTCATACTCGAGACAATACTCTTAGCCAGCAACAGCAAGGAGTTGTTTCATCTAGACACATGTCAAATTTTGTGACACCTAGTCAAAGTGGACAGGTACCTGCATCCCCCCATTTCAGTCATCAGTATCAAGCTGAGGTTCCCCCCAATTCTCAGAAAGGATTTGGTGTGGTGCCGGGAAGTGATGCCTCTGTCTTATACAATTCTCAGGCTTTCCAACAACCTAGTAGTAAACCCCAGTCCTTCCAGCAGCCCAATAACTCTATTGCCTTATCTAGTCAAGCTAGCAGTACAAATCCTCAGCATCAACCTGTCATGCAATATACAGCAGACCAAACAAACTCTAATCCTCCCATTCAGCAACATCCCGCCTTTGGAGTTAGTCAAGGCACCCCAGATTTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAAACACAAGGAGAACATGGGCCAGGAGTTCAACAATGA 2919 0.4409 MPLPTKPMKPLHETGRDSEESATPSNNLWVGNLTPDVSDSDLMNLFAQYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGFHFRGNSLKIEFARPAKPCKQLWVGGINPAVTKEDLEADFRKFGKIEDYKFLRDKNTACVEFFNLDDAIQAMKIMNGKRIGGENIRVDFLRSNSTRKDQLLDHGQFQGKSLGPTDFYSGQKRPLNSQPQTGRKGDGQPSNILWIGYPPNVQIDEQMLHNAMILFGEIERIRSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITINYSNGDQVHGKDYPGFYPGSKGPRPDLFLNEHPHRPLQMDLFGHNRPMIPNNFPGQLSTGGIVGPNMPMRPFGPQVGPESVFSGPDFNESSTLHQFQDSSLTNKMGPNWKRPSPPAPGLLSSPATGARLPVRSASGAWDVLDVNNISRDSKRSRIDATLPNDDAPYGDIHGRGILGPGSTRITGGVHPSVQPGDMDHIWRGLIAKGGSPVCHARCIPIGKGIGAELPEVVDCSARTGLDVLAKHYADAIDFEIVFFLPDSEDDFSAYTEFLRYLGAKNRAGVAKFGNTTLFLVPPSDFLTKVLKVNGPERLYGVVLKFAPVPNGVPMHHSSQMPTPSPNQYMQQFPPSQAEYDMNPAKDDQVLPMDYNRMLHEDSKLPAKQVYPPIGGPSVQSAAPDYAPNTASGSQAGVALTPELIATLASFLPTNAQSSATNGAKSAVGSSTVRPPFPPVAPNDGNQSQLWKQDHQIADQSIHPPQQFRNMYNNHNTHFQPYPPASAPGHTSQVFSGSSHTRDNTLSQQQQGVVSSRHMSNFVTPSQSGQVPASPHFSHQYQAEVPPNSQKGFGVVPGSDASVLYNSQAFQQPSSKPQSFQQPNNSIALSSQASSTNPQHQPVMQYTADQTNSNPPIQQHPAFGVSQGTPDLEADKNQRYQSTLQFAANLLLQIQQQQTQGEHGPGVQQ* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4796 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Psa7g4796 972 SUPERFAMILY RNA-binding domain, RBD 202 303 IPR035979 GO:0003676
Psa7g4796 972 Gene3D - 209 303 IPR012677 -
Psa7g4796 972 CDD RRM3_Spen 225 295 - -
Psa7g4796 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Psa7g4796 972 PANTHER RNA RECOGNITION MOTIF-CONTAINING 6 971 - -
Psa7g4796 972 SMART rrm1_1 224 292 IPR000504 GO:0003723
Psa7g4796 972 SMART rrm1_1 104 171 IPR000504 GO:0003723
Psa7g4796 972 SMART rrm1_1 27 94 IPR000504 GO:0003723
Psa7g4796 972 SUPERFAMILY RNA-binding domain, RBD 100 188 IPR035979 GO:0003676
Psa7g4796 972 Pfam SPOC domain 485 602 IPR012921 -
Psa7g4796 972 MobiDBLite consensus disorder prediction 790 820 - -
Psa7g4796 972 MobiDBLite consensus disorder prediction 873 903 - -
Psa7g4796 972 CDD RRM3_Spen 105 174 - -
Psa7g4796 972 MobiDBLite consensus disorder prediction 200 219 - -
Psa7g4796 972 Gene3D - 101 182 IPR012677 -
Psa7g4796 972 Gene3D - 9 100 IPR012677 -
Psa7g4796 972 SUPERFAMILY RNA-binding domain, RBD 16 100 IPR035979 GO:0003676
Psa7g4796 972 MobiDBLite consensus disorder prediction 1 26 - -
Psa7g4796 972 CDD RRM3_Spen 28 97 - -
Psa7g4796 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Psa7g4796 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Psa7g4796 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 91 IPR000504 GO:0003723
Psa7g4796 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Psa7g4796 972 MobiDBLite consensus disorder prediction 200 221 - -
Psa7g4796 972 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 6 971 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4796 Psa-Chr7 416102199 416111914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4796 25 286 Eukaryotic Initiation Factors Gene Family AT4G34110 21.951 4.57e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4796 - - mtr:MTR_4g068120 1576.61