Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4756 ATGAACCATGATCAGCAACACAAACCATCCTTCTTTGCTGTCATCAAAGGAAATTTCAATCAATTGAAAGTTCCACCGAAGATTGTTATGAATTTGGGTGAAGAGGTGTGGAAAAAGGAATCAATTATTCTGATAGGCTCATGTGGTGAGAAGTGGCAAGTGAGTATTTTGAAGAAAGAAAACGACATGTATCTGCAAAACATTGGTTGGGAAAAATTCATGAAAGAGAACTCAGTGATGAATGAAGAGTTCTTGGTTTTCACATATAACGGAGAGAACAGGTTCCAGGTGAAAATTTTTGGTAGGAATGGATTAGAGAGACCAAGCTTCAAGAAAGAAGAAGAAGTTGCTGCAGAAGCTCCAACTGTGGTGAAGAGAAAGAGAGGTAGACCAAGCTTCAAGAAAGAGGAAAAAGTTTCTGCAGAAGCTCCGGTTGTGGTCAAGAGAAAGAGAGGTAGACCAAGAAAAAATCCTGCTGCTGAGACAGTATGTGCGAACAAAGAAAAGGAAGCTACAGCAACAGTAGTTGCTAAGAAAGAAAAAGAAAAAGAAGCTACAGAAACAGTTGTGGCTAGAAGAGAGAATGATGAACCAAGAAAAACTCCTGCTGCTAAGAGAGTATGTGTCAAAAAAGAAAAGAAGGAAGCTGTAGAAATAGAAACAATGGAGAGTAAGAGAAACAAGGGAAGACCAAGAAAAAGTGCTCCTCCTCCTCCTGCTGCTGCTGTTATCATAATTATAGACTGA 747 0.3936 MNHDQQHKPSFFAVIKGNFNQLKVPPKIVMNLGEEVWKKESIILIGSCGEKWQVSILKKENDMYLQNIGWEKFMKENSVMNEEFLVFTYNGENRFQVKIFGRNGLERPSFKKEEEVAAEAPTVVKRKRGRPSFKKEEKVSAEAPVVVKRKRGRPRKNPAAETVCANKEKEATATVVAKKEKEKEATETVVARRENDEPRKTPAAKRVCVKKEKKEAVEIETMESKRNKGRPRKSAPPPPAAAVIIIID* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4756 248 Pfam B3 DNA binding domain 20 102 IPR003340 GO:0003677
Psa7g4756 248 MobiDBLite consensus disorder prediction 176 230 - -
Psa7g4756 248 ProSiteProfiles B3 DNA-binding domain profile. 7 103 IPR003340 GO:0003677
Psa7g4756 248 SUPERFAMILY DNA-binding pseudobarrel domain 5 104 IPR015300 -
Psa7g4756 248 SMART B3_2 11 103 IPR003340 GO:0003677
Psa7g4756 248 CDD B3_DNA 9 100 IPR003340 GO:0003677
Psa7g4756 248 PANTHER B3 DOMAIN-CONTAINING 5 225 - -
Psa7g4756 248 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 5 225 - -
Psa7g4756 248 MobiDBLite consensus disorder prediction 176 248 - -
Psa7g4756 248 PRINTS AT-hook-like domain signature 125 135 IPR017956 GO:0003677
Psa7g4756 248 PRINTS AT-hook-like domain signature 146 157 IPR017956 GO:0003677
Psa7g4756 248 PRINTS AT-hook-like domain signature 223 233 IPR017956 GO:0003677
Psa7g4756 248 Gene3D - 2 104 IPR015300 -
Psa7g4756 248 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Psa7g4756 248 SMART AT_hook_2 148 160 IPR017956 GO:0003677
Psa7g4756 248 SMART AT_hook_2 225 237 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4756 Psa-Chr7 414467722 414469652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4756 9 103 REM Transcription Factor Family AT3G06220 31.959 4.03e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa7g4756 B3 1.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4756 - - mtr:MTR_4g068300 192.971