Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4661 ATGAAATCACATGAAAAAACCAACAATGGCGCCGGTAACCCCAAACCCTCCAATCCACCGAAACCTTCTCCGGTTAAACCCGACCCGGAGAAAACGGTACATGAAGGTCAAACAAGTTCGGGCAGAAGGAAAACTAGCAAATTTTTTGACACGTCTAAACCAAAGCCAAAAGATGAGATTGAAGAAACACAGGCGCTCCCGGCTAAAAGAAAGACTATGAATGACATTAATGAAGATGACTCTGTTCTGGCCCCTGATAAAAAGAAGTTAGCTGGTTCAACTCCTACTAAGAAATTGAAGAGTGGTTCAGGTAGGGGGATCCCACAGAAACCTGTAGATTTGGATGGAAGTGGCGAAGACGATGAGAAAGATGTTGTGTCTCCTATCAAATCTGGTGGTAGGGGTCGTGGTGGAAGAGGAGCATCAACACAAACAACTGCATCTGGTGGGAGGGGCCGAGGAGGTGGCAGGGGTGGATTCATGAATTTTGGTGAAAGAAAAGATCCACCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGTTTAACTTTTGTAATAAGTGGAACACTAGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGTGTCACCGGATCAGTCAGCAAGAAAACAAATTATTTGTTATGTGACGAAGATATTGGGGGAAGGAAGTCTGAAAAAGCTAAAGAGCTAGGAACTTCATTCCTCACAGAGGATGGATTGTTCGATATGATCCGGGCATCTAAACCTGCAAAAGCTCCTAAGCAAGATGAAAGCAAGAAGTCTCTGAATAAGGCTGTTGCAGTGCCATCCCCATCAAAAGTTCCTCTGAGAGCAGAAACAAAGGCTGTTGCAGTGCCATCCCCTTCAAAAATTCATCTGAAAGCAGAAACAAAGGCCTCTCTGTCTTCATGCTCACCTTCCAACCAAGCCAAATCTAAGAAAGCTGCTACTGTTCAGTCTAATGTGATGTGGACAGAGAAACATCGACCGACAAATCCAAAGGATATCATAGGAAATCAATCACTTGTTTTACAGCTTCGAAATTGGTTAAAAGGTTGGCATGAGCAATTTTCCAACACAGGTGGTAATAAAAAACAAGGAAAAAAGCAGAATGACTCTACTTCCAAAAAGGCTGTCTTATTAAGTGGAACCCCCGGTATAGGCAAAACAACATCAGCAAAGCTGGTGTGTCAGGAGCTGGGTTTCCTGGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGCGGAAGCAATTCAAATTCTATCAAGGAACTTGTGACGAATGAGGCCCTTGGCACTAATATGAATAGGCCAAAGCAGTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCCATTATCTGCATTTGCAATGACCGTTATAGCCAGAAATTAAAAAGCCTAGTGAACTACTGTTTGCTTCTTAGTTACCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTTATGGAGGTTGCAAAGGCTGAAAGGCTTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCAGAAAGAGTTAATGGAGATATGCGAATGGCACTAAACCAGTTACAATATATGGGCCTCTCCATGTCAGTTATCAACTATGATGATATCAGGCAGCGCTTACTTACCAATGCGAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTCAATGCTGGAAAGATGAAAATGGACGAGAGGATAAATCTTAGCATGAGTGACCCTGATCTTGTTCCTCTACTTATCCAGGAAAACTATATCAATTATAGACCAAGCTCGGCTGGTAAGGATGACAATGGCATAAAACGCATGGCACTGATTGCCCGTGCTGCCGAGTCTATTGCTGATGGTGATATAGTGAACGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTCTGGCATCATGTATACTTCCTGCTTCATTGTTACATGGGTCAAGGGAAATACTTGAACAGGGAGAACGAAATTTTAACCGATTTGGTGGTTGGCTGGGGAAGAATTCGACAAGGGGTAAAAACATGAGACTTATGGATGACATGCATGTTCACATTCTAGCATCTCGCGAATCTAGTTCGGGAAGGGACACTATCCGCTTGGAATACCTTACTCTTCTTCTTAAAAAATTGACAGAACCTCTCCGAGTCCTTCCTAAGGCTGAAGCTGTTGAGCAAGTTGTGGAGTTTATGAATACATACTCAATCAGTCAGGAAGATTTTGATACTATAGTAGAGCTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACTGCCTGCCGTCAAGTCAGCTTTGACAAAAGCATACAAAGAGCAAAGCAAAACTCGGATGGTTCGAGCTGCGGATTTAATTACTCTTCCTGGAATTAAAAAGGCTCCTAAAAAGCGAATTGCTGCTATATTAGAACCGGTTGATGAAGGAGTGGAACAAGGTGATGATAACAATGCCTTGGATGAGAGTGAAGAAGAGAACAACTCTGACGCAGATGAGTCAGGTGCTGTAACTGGCGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAGTTCAAAGGGCATGCAAGTACAATTAGAATTAAAGGGAACGGGAAGTTCTTCCAAGAAGGCATCTGGTGGTAGAGGTAAAGGTGCTTCAGCATCTGGGCAGAAAGTTGCTCAAACGGCAAAGGCTCCTGCAAAAAGAAAAAGGTGA 2856 0.4296 MKSHEKTNNGAGNPKPSNPPKPSPVKPDPEKTVHEGQTSSGRRKTSKFFDTSKPKPKDEIEETQALPAKRKTMNDINEDDSVLAPDKKKLAGSTPTKKLKSGSGRGIPQKPVDLDGSGEDDEKDVVSPIKSGGRGRGGRGASTQTTASGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPKQDESKKSLNKAVAVPSPSKVPLRAETKAVAVPSPSKIHLKAETKASLSSCSPSNQAKSKKAATVQSNVMWTEKHRPTNPKDIIGNQSLVLQLRNWLKGWHEQFSNTGGNKKQGKKQNDSTSKKAVLLSGTPGIGKTTSAKLVCQELGFLAIEVNASDSRGKADSKIEKGISGSNSNSIKELVTNEALGTNMNRPKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKFMEVAKAERLQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIRQRLLTNAKDEDISPFTAVDKLFGFNAGKMKMDERINLSMSDPDLVPLLIQENYINYRPSSAGKDDNGIKRMALIARAAESIADGDIVNVQIRRYRQWQLSQTSSLASCILPASLLHGSREILEQGERNFNRFGGWLGKNSTRGKNMRLMDDMHVHILASRESSSGRDTIRLEYLTLLLKKLTEPLRVLPKAEAVEQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGILPAVKSALTKAYKEQSKTRMVRAADLITLPGIKKAPKKRIAAILEPVDEGVEQGDDNNALDESEEENNSDADESGAVTGEKLKSELQSLSSKGMQVQLELKGTGSSSKKASGGRGKGASASGQKVAQTAKAPAKRKR* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4661 951 ProSiteProfiles BRCT domain profile. 180 261 IPR001357 -
Psa7g4661 951 Gene3D BRCT domain 157 259 IPR036420 -
Psa7g4661 951 MobiDBLite consensus disorder prediction 114 129 - -
Psa7g4661 951 CDD AAA 385 488 - -
Psa7g4661 951 CDD BRCT_RFC1 180 258 - -
Psa7g4661 951 Gene3D - 525 595 - -
Psa7g4661 951 SUPERFAMILY post-AAA+ oligomerization domain-like 596 741 IPR008921 GO:0003677|GO:0006260
Psa7g4661 951 Pfam BRCA1 C Terminus (BRCT) domain 182 257 IPR001357 -
Psa7g4661 951 Gene3D - 334 524 IPR027417 -
Psa7g4661 951 PANTHER REPLICATION FACTOR C SUBUNIT 1 1 924 - -
Psa7g4661 951 MobiDBLite consensus disorder prediction 863 885 - -
Psa7g4661 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 585 IPR027417 -
Psa7g4661 951 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 1 924 - -
Psa7g4661 951 MobiDBLite consensus disorder prediction 371 390 - -
Psa7g4661 951 PIRSF RFC1 2 927 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Psa7g4661 951 Pfam ATPase family associated with various cellular activities (AAA) 392 491 IPR003959 GO:0005524|GO:0016887
Psa7g4661 951 MobiDBLite consensus disorder prediction 859 951 - -
Psa7g4661 951 SMART AAA_5 388 526 IPR003593 -
Psa7g4661 951 MobiDBLite consensus disorder prediction 261 281 - -
Psa7g4661 951 Pfam Replication factor RFC1 C terminal domain 665 827 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Psa7g4661 951 MobiDBLite consensus disorder prediction 895 926 - -
Psa7g4661 951 SMART BRCT_7 182 260 IPR001357 -
Psa7g4661 951 Gene3D - 597 706 - -
Psa7g4661 951 MobiDBLite consensus disorder prediction 27 86 - -
Psa7g4661 951 SUPERFAMILY BRCT domain 180 261 IPR036420 -
Psa7g4661 951 MobiDBLite consensus disorder prediction 1 162 - -
Psa7g4661 951 CDD HLD_clamp_RFC 525 583 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4661 1 907 Core DNA Replication Machinery Family AT5G22010 65.385 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4661 K10754 - gmx:100802809 1318.14