Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4660 ATGGAACTCCGTCCTCGTCGACTCCTTACCGATGATGTGGATTCTGCGGCTGAGAAGGGGAAGCAGCCGATGGATGATTCTGATGGAAAGTGTGACAGTGACACTGAAAGTGATCTTGGTTCGTTTTTGAAATCTGATTCTGATTATGAAGCTGAAGCCGTTGACGAGCACTTAACTTTTGACTTGAATCAAGTCCCAACTTTAAGCGGAAATGATTCTGATTGTGATTCTTTAGCTAAAAAGATAATGGCACTGTCTCGAAAGAGAGGAAGAGAATCCCTGATAAAAATCGAAGGCCTGAGTGATTTAGAGAGAGAGCTGGAGCACGGTGATGAAGCTTCAATTGATTCACCTAAGGAGAAAAAGAAGCGAAAAGCAAATAAAACAAAAAAGGGAGTTCCTAAGCCAGTGTTGTTATGGCATGCTTGGAGAGATGAGCATGAAAGATGGATTGATCAGAATTTGTTGGAAGATGTTAACTTAGATCAAAGTGAAGTGATGAATGAGACTGCCGAGGCATCGTCAGATCTGATTGTTCCTTTGCTGAGGTACCAAAGGGAATGGTTAGCATGGGCTTTGGAGCAAGAAAATTCTGTAAGTAGAGGAGGAATCCTCGCCGATGAAATGGGTATGGGGAAAACTATTCAAGCAATTGCCCTTGTTCTTGCTAAACGTGAATTTCAACAAATGAGTCGCGAACCAGATGAACACCCACATTCACCCGGGTCATCTAAAGTCCTTCCTGCGATCAAAGGAACCCTTGTCATCTGTCCTGTGGTTGCTGTTACTCAGTGGGTTAGTGAGATTGATCGATTTACTTTGAGAGGAAGCACCAAGGTTCTGGTTTATCATGGGGCAAAGAGAGGGAAGAGTGCTGAACAGTTCTCAGAGTATGATTTTGTAATAACAACATATTCTATTGTTGAATCGGAGTACAGAAGGTATGTGATGCCTCCTAAGGAGAAATGCCTATATTGTGGAAGATTATTTTACGAGAGTAAATTAATTATTCACCAGAAGTACCACTGTGGGCCTGGCGCTATTAAAACTGAAAAACAATCAAAGCAGACAAAGAAAAAGAAAAGTGGTCAGAGTTCAAAGTGGGATGGAGGGTTGAAGCAGGGCTCTATCAAGAAGAAGAAGAATGAAATATCCTCAAGAATAGAAGACAATGAGAAGTCTTGGCTCCATGCTGTTAAGTGGCAGAGGATCATATTGGATGAGGCCCACTATATAAAATCTAGGCATTCTAACACTGCAAAAGCAGTTCTTGCTTTAGAGTCTTTCTACAAATGGGCATTAAGTGGCACACCCCTTCAGAACCGTGTTGGAGAGCTATATTCTTTGGTACGATTTCTGCAGATAGTTCCTTATTCCTATAACCTATGCAAGGACTGTGATTGCAGGATGCTTAATCATAGCTCCTCTAGACAATGTTCAAATTGCCCCCACAGTTCTGTTAGGCATTTTTGTTGGTGGAACAAAAATATTGCCACACCAATTCAATCATATGGATATGGTGATGGGGGGAAAAGAGCTATGATATTGCTCAAAAACAAAATTTTAAAGAGCATAGTGTTAAGGCGAACTAAAGTTGGCAGGGCTGCTGATCTGGCACTTCCTCCTAGGATCGTATCATTGAGGAGGGATAGCCTAGATACAAAAGAACAAGATTATTATGAATCACTATACAGTGAAAGTCAAGCACAGTTTAATACGTACGTACAAGAAAATACTCTGACGAATAATTATGCTCATATTTTTGACCTCCTCACTCGACTACGTCAGGCTGTGGATCATCCTTATCTTGTGGTGTATTCTCCAACTGCAGCAGCACTAAAAGGAGGGAACTTGGTTAGTAATGGTAATGTTGAAGTAGAATGTGGCCTTTGTCATGATGCAGTTGAAGATCCTGTGGTTACCTCTTGTGAGCATACCTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCCTTAGGTCAAGTATCATGCCCCTCATGCTCTAAGTTACTCACTGTTGATTTGACTTCCAACAAGGATACTGTGGTTCATAGAACAACAATTAAGGGGTTCAGACCTTCAAGCATTTTAAACAGAATCCAGATTGAGAATTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATCTATGGTTGAAATGGATGGTTCTGCAAAAGCTATTGTTTTTAGCCAATTCACATCATTCTTGGATCTCATAAACTACTCCTTGCAAAAGTCAGGTGTATCTTGCGTTCAACTGGTTGGAAGTATGACATTGGCTGCTCGGGATGTTGCCATTAAAAAATTTACCGAAGACCCAGACTGTAGAATTTTCCTAATGAGCTTGAAAGCTGGAGGCGTTGCTCTGAATTTGACCGCAGCATCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTTGAGCGTCAGGCTCAAGACAGAATTCACCGTATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTCATTGAAAACACAATCGAGGAGAGGATCTTGAAACTTCAAGAGAAGAAGGAATTAGTATTTGAAGGGACTGTAGGTGGTTCTACAGAGGCTCTAGGGAAGTTAACGGTGGCCGACTTGAGATTTCTCTTTGTTACCTAG 2643 0.4128 MELRPRRLLTDDVDSAAEKGKQPMDDSDGKCDSDTESDLGSFLKSDSDYEAEAVDEHLTFDLNQVPTLSGNDSDCDSLAKKIMALSRKRGRESLIKIEGLSDLERELEHGDEASIDSPKEKKKRKANKTKKGVPKPVLLWHAWRDEHERWIDQNLLEDVNLDQSEVMNETAEASSDLIVPLLRYQREWLAWALEQENSVSRGGILADEMGMGKTIQAIALVLAKREFQQMSREPDEHPHSPGSSKVLPAIKGTLVICPVVAVTQWVSEIDRFTLRGSTKVLVYHGAKRGKSAEQFSEYDFVITTYSIVESEYRRYVMPPKEKCLYCGRLFYESKLIIHQKYHCGPGAIKTEKQSKQTKKKKSGQSSKWDGGLKQGSIKKKKNEISSRIEDNEKSWLHAVKWQRIILDEAHYIKSRHSNTAKAVLALESFYKWALSGTPLQNRVGELYSLVRFLQIVPYSYNLCKDCDCRMLNHSSSRQCSNCPHSSVRHFCWWNKNIATPIQSYGYGDGGKRAMILLKNKILKSIVLRRTKVGRAADLALPPRIVSLRRDSLDTKEQDYYESLYSESQAQFNTYVQENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAALKGGNLVSNGNVEVECGLCHDAVEDPVVTSCEHTFCKGCLIDFSASLGQVSCPSCSKLLTVDLTSNKDTVVHRTTIKGFRPSSILNRIQIENFQTSTKIEALREEIRSMVEMDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLVGSMTLAARDVAIKKFTEDPDCRIFLMSLKAGGVALNLTAASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSTEALGKLTVADLRFLFVT* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4660 880 PANTHER - 717 877 - -
Psa7g4660 880 PANTHER - 389 716 - -
Psa7g4660 880 PANTHER - 123 368 - -
Psa7g4660 880 Coils Coil 697 717 - -
Psa7g4660 880 Gene3D - 545 875 IPR027417 -
Psa7g4660 880 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 870 IPR001650 -
Psa7g4660 880 Pfam SNF2-related domain 196 604 IPR000330 GO:0005524|GO:0140658
Psa7g4660 880 Pfam Helicase conserved C-terminal domain 713 824 IPR001650 -
Psa7g4660 880 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 389 716 - -
Psa7g4660 880 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 123 368 - -
Psa7g4660 880 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 717 877 - -
Psa7g4660 880 Pfam Zinc finger, C3HC4 type (RING finger) 627 667 - -
Psa7g4660 880 MobiDBLite consensus disorder prediction 1 41 - -
Psa7g4660 880 Gene3D - 340 544 IPR038718 -
Psa7g4660 880 SMART ultradead3 177 472 IPR014001 -
Psa7g4660 880 SMART helicmild6 741 824 IPR001650 -
Psa7g4660 880 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 456 IPR014001 -
Psa7g4660 880 ProSitePatterns Zinc finger RING-type signature. 643 652 IPR017907 -
Psa7g4660 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 695 IPR013083 -
Psa7g4660 880 ProSiteProfiles Zinc finger RING-type profile. 628 668 IPR001841 -
Psa7g4660 880 SMART ring_2 628 667 IPR001841 -
Psa7g4660 880 CDD SF2_C_SNF 708 835 - -
Psa7g4660 880 Gene3D - 183 326 IPR038718 -
Psa7g4660 880 MobiDBLite consensus disorder prediction 350 380 - -
Psa7g4660 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 878 IPR027417 -
Psa7g4660 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 529 IPR027417 -
Psa7g4660 880 CDD DEXDc_SHPRH-like 181 529 - -
Psa7g4660 880 SUPERFAMILY RING/U-box 625 672 - -
Psa7g4660 880 MobiDBLite consensus disorder prediction 109 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4660 Psa-Chr7 402341838 402351841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4660 113 880 RAD5 or RAD16-like Gene Family AT1G05120 67.178 0.0 1065
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa7g4660 SNF2_N 5.4e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4660 K15083 - gmx:100786366 1173.69