LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g4553	ATGTCAAGAGCCAAAGAGGTTATTACTTGCAAAGCTGCAATATGCTGGGGTGTAGGAAAGGCAGTGACAGTGGAAGATATACAAGTGGAACCACCAAAAGCAACAGAAGTTCGAGTTAAGATGTTGTGTTCTAGCGTCTGCCATACAGACATTTCAAGCCTTCAAGGATTACCACATAATCAATTTCCTCTGGCACTTGGACACGAAGGAATTGGTGTTGTAGAGAGTGTTGGTGATGAAATAACAAATCTAAAGGAAGGTGATTTGATAATTCCAACACACATGGGGGAGTGTGAAGAATGTGAGAACTGTGTTTCAGGAAAAACCAATTTGTGTTTGACACATCCTTTAAGAGTGAATGGTCTAATGCCAGATAACACATCAAGGTTGTCGGTACGAGGTCAAACACTGTATCATGTTTTGAGCTGTACTACATGGTCGGAGTATGTGGTTGTTGATGTCAACTACCTTCTCAAAGTTAATCCAACCATTAATTTAGCTCATGCTAGTTTCATTTCATGTGGTTTTTCAACCGGTTATGGAGCTTGTTGGAAGGAAGCCGTTGTTGAAACCGGTTCAACTGTAGCTGTTTTTGGTCTCGGGGCTGTTGGATTAGGGGCCATAAGTGCGGCCAAGATGATGGGAGCAAGTAAGATAATTGGAGTTGACAAAAATGAGATGAAGAAAGAAAAAGGAGAGGCTTTTGGAATGACACACTTTATAAATACTAATGTTTCTGATAAGTCTGCTTCTGATTTGGTTAAAGAGTTAACTGGAATGGGTGTAGATTACTGTATTGAATGTACTGGTGTTGCATCTATGTTTACCGAATCTGTGGAAGCCACAAAAATGGGAACAGGTAAAACAATTGCAGTTGGTATAGGAACTGAACTTGTTGTACCGTTTGGCCTTGTTGCTATTCAGTTTGGTAGAACCTTAAAAGGTTCTGTTTTTGGAGGTATAAAAGCTAAATCCGATCTTTCCATCATTGCTCACAAATGTCAAAAACAGGAATTCCCTCTTGAAGAACTTTTCACTCATGAGGTTCCTTTGGTTGATATAAACAAAGCATTTGAGTTACTGAAACAGCTCGATTGTGTGAAAGTTGTTATCAAGATGTAA	1122	0.3948	MSRAKEVITCKAAICWGVGKAVTVEDIQVEPPKATEVRVKMLCSSVCHTDISSLQGLPHNQFPLALGHEGIGVVESVGDEITNLKEGDLIIPTHMGECEECENCVSGKTNLCLTHPLRVNGLMPDNTSRLSVRGQTLYHVLSCTTWSEYVVVDVNYLLKVNPTINLAHASFISCGFSTGYGACWKEAVVETGSTVAVFGLGAVGLGAISAAKMMGASKIIGVDKNEMKKEKGEAFGMTHFINTNVSDKSASDLVKELTGMGVDYCIECTGVASMFTESVEATKMGTGKTIAVGIGTELVVPFGLVAIQFGRTLKGSVFGGIKAKSDLSIIAHKCQKQEFPLEELFTHEVPLVDINKAFELLKQLDCVKVVIKM*	374

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g4553	373	Pfam	Zinc-binding dehydrogenase	202	320	IPR013149	-
	Psa7g4553	373	Gene3D	-	13	368	-	-
	Psa7g4553	373	CDD	liver_alcohol_DH_like	8	372	-	-
	Psa7g4553	373	PANTHER	ALCOHOL DEHYDROGENASE	5	372	-	-
	Psa7g4553	373	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	67	81	IPR002328	GO:0008270\|GO:0016491
	Psa7g4553	373	Pfam	Alcohol dehydrogenase GroES-like domain	35	160	IPR013154	-
	Psa7g4553	373	Gene3D	-	179	316	-	-
	Psa7g4553	373	PANTHER	ALCOHOL DEHYDROGENASE-RELATED	5	372	-	-
	Psa7g4553	373	SUPERFAMILY	GroES-like	5	188	IPR011032	-
	Psa7g4553	373	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	164	329	IPR036291	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g4553	Psa-Chr7	379433807	379436092	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g4553	35	365	Monolignol Biosynthesis Gene Families	AT2G21730	24.852	1.24e-14	72.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g4553	K00121		-	gmx:100798341	593.193

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