Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4516 ATGGTAAGAGCTCCTTTTTATGACAAAAATGGTGTTAAGAAAGGTGCCTGGAGTAGAGAAGAAGATGAGTGTTTAAGTTCTTTTATTCAGAAACATGGTCATTCTAATTGGCGTCAACTTCCCAAGCTTTCAGGTTTAGCGAGGTGTGGAAAAAGTTGCAGACTACGTTGGTTGAATTACTTGAAGCCAAATCTTAAACATGGTAACTACACACGAGAGGAAGAAGAAATCATCATCAAATTACACCACCAACTTGGAAATAAATGGTCTTTGATTGCTGAAAAGCTGCCGGGAAGAACGGACCACGAGATAAAGAACTATTGGCATAGCTACCTAAAAAAGTCCTCAAAGATAAATGGCTACAACTACACAATTTCTGAGTTGAATTCTAAACCATATGATATTGTTGAAGAAAATGATATTCAGCATTCTGTAACATCTCAAAACCCTAGTTCTGGTGTTGATAAGGACTTTCATAACTATATTTTAGAAAGCTCGACATTGCCAATGCTAGAGGAAACATTATCTGAAGAGAACTATTCGCCTACCTCCATGAATAGCTCCATGATAGAAGAAGACAACGGTGCTCCATGGTTGGCGTTCGAAGCATTCGAGGGCGATTTTTGGAATGAACCATTCATCCTAGATGATACATACACTACTAATGAGATATCTATTGATGACATAGAGTTAATGATTTCAGACCACTATGATGGTTCATATATGTTTTAA 732 0.373 MVRAPFYDKNGVKKGAWSREEDECLSSFIQKHGHSNWRQLPKLSGLARCGKSCRLRWLNYLKPNLKHGNYTREEEEIIIKLHHQLGNKWSLIAEKLPGRTDHEIKNYWHSYLKKSSKINGYNYTISELNSKPYDIVEENDIQHSVTSQNPSSGVDKDFHNYILESSTLPMLEETLSEENYSPTSMNSSMIEEDNGAPWLAFEAFEGDFWNEPFILDDTYTTNEISIDDIELMISDHYDGSYMF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4516 243 CDD SANT 69 112 IPR001005 -
Psa7g4516 243 Gene3D - 7 67 - -
Psa7g4516 243 CDD SANT 16 61 IPR001005 -
Psa7g4516 243 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Psa7g4516 243 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa7g4516 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa7g4516 243 SMART sant 13 63 IPR001005 -
Psa7g4516 243 SMART sant 66 114 IPR001005 -
Psa7g4516 243 PANTHER MYB-RELATED PROTEIN 308-LIKE 1 220 - -
Psa7g4516 243 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa7g4516 243 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa7g4516 243 Gene3D - 68 134 - -
Psa7g4516 243 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa7g4516 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa7g4516 243 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4516 Psa-Chr7 374277557 374280843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4516 1 161 MYB Transcription Factor Family AT2G31180 49.714 1.56e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa7g4516 Myb_DNA-binding 9.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4516 K09422 - qsu:111987707 229.565