Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4462 ATGGAGAAGAACAACGGCAAAGTCTGCGGGATTTGTGATAAGTGGTTCTCCAGTGGGAAAGCCTTTGGAGGCCACATGAGATCTCACTACGTCAAATTGCCGATTCCTCCAAAGCTTGAAACTAACAATCAAGTAGAAGATGATTCAGCCAATTCAACCCAGCATCCCATTCAATCTGCTTCCTCACTGAGTTTCAGATCTATGAAACGCAACTTGTCTGCCATCTCTGCAAGCTCAAACAGAGAAAACAAATCTGAGTCCTACCCACAAAACCCAACCCACAAAAGATCTAAATGCCTCCGCAAACAAAATGCAGCGGCCGATACAAAATCTCTGTCAGAACAAACAAGTCCAATAAGTGAAACTAAAATTCCTCAGGGTGCTTGGATAGTGTGGGATTTTTACAAACTCGCGCAGCAAGAGGAAGAGGCAAAGGCACAAAAAATAAACGAAATCAACGAAATAAAGGCAAAAGACAGTGGAAGCGGGAGAGGTGACTTGCTTGCTCAAGCTGACTCCCAAACCAGGTTCAAGTGTGAGAAGTGTGGAAAAGTGCTCAGATCTTTTCAAGCACTTGGTGGGCACAAAGCACACTGCAGAATTGACAAAGATGGTGACTTTATTGATCAGAAACCTTTTCAATGCCCATACTGCAACAGAATGTTCAAGAATGCTCAAGCACTTGGTGGACACAGGAGGACCTCTATTTTCACAAGGTTTGTACTTATGAACAGTGCTACAGAAGCCATGGCACCGCCATTGCGAATGGCATGGCAGAATTTTCTAACAACCGCCATACAGTTCGGTGATGAGCTTGGCTGCAATGTACCAAGCTGCTATGCATGTGCTCTGGTATGGCTTTCTAGGGGAGAAATTAACCTTGATGAATTATCCCTTTTTCAAATTTTGAGAGTTTGTTTCAAGCCATTGCTGGCAAAAAGGCTAGATGTAAAAGAAATGCTTAAATATCATGATCCGACAAAAGAGGTATCAGATCTATCGCGAAAAGTTAAGATATGCCGCTATGATTCCAAAAATGACAAAACAGGGGGTTTGGGATTGTGCAAAAGTGTGGCACCTCTAATGAGGCCCAGCGGTGTTGCCTATTGCGGATGGTGGTCCATGGCGGAGAGCCAAAATCCCGCCATACCATCATATTTTGCTCTCTTCTCTTTGGTTCCACCTTTTTTCAGCGGTGTTGCCTATTGCGGATGGTGGTCCATGGCGGAGAGCCAAAATCCCGCCATACCAGAGACTTTGCAGCGCTCTTATAGCGGAATATGGCAGAAAACCCACCCCGTATATCTGCCATAG 1314 0.4475 MEKNNGKVCGICDKWFSSGKAFGGHMRSHYVKLPIPPKLETNNQVEDDSANSTQHPIQSASSLSFRSMKRNLSAISASSNRENKSESYPQNPTHKRSKCLRKQNAAADTKSLSEQTSPISETKIPQGAWIVWDFYKLAQQEEEAKAQKINEINEIKAKDSGSGRGDLLAQADSQTRFKCEKCGKVLRSFQALGGHKAHCRIDKDGDFIDQKPFQCPYCNRMFKNAQALGGHRRTSIFTRFVLMNSATEAMAPPLRMAWQNFLTTAIQFGDELGCNVPSCYACALVWLSRGEINLDELSLFQILRVCFKPLLAKRLDVKEMLKYHDPTKEVSDLSRKVKICRYDSKNDKTGGLGLCKSVAPLMRPSGVAYCGWWSMAESQNPAIPSYFALFSLVPPFFSGVAYCGWWSMAESQNPAIPETLQRSYSGIWQKTHPVYLP* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4462 437 Pfam C2H2-type zinc finger 213 234 - -
Psa7g4462 437 Pfam C2H2-type zinc finger 9 29 - -
Psa7g4462 437 Pfam C2H2-type zinc finger 176 198 - -
Psa7g4462 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Psa7g4462 437 Coils Coil 138 158 - -
Psa7g4462 437 MobiDBLite consensus disorder prediction 74 119 - -
Psa7g4462 437 MobiDBLite consensus disorder prediction 74 94 - -
Psa7g4462 437 Gene3D Classic Zinc Finger 139 238 - -
Psa7g4462 437 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 234 IPR044303 GO:0006355
Psa7g4462 437 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Psa7g4462 437 MobiDBLite consensus disorder prediction 104 119 - -
Psa7g4462 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 234 IPR013087 -
Psa7g4462 437 SMART c2h2final6 7 29 IPR013087 -
Psa7g4462 437 SMART c2h2final6 213 233 IPR013087 -
Psa7g4462 437 SMART c2h2final6 177 198 IPR013087 -
Psa7g4462 437 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 234 - -
Psa7g4462 437 SUPERFAMILY beta-beta-alpha zinc fingers 8 234 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4462 Psa-Chr7 368654084 368656809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4462 9 234 C2H2 Transcription Factor Family AT3G60580 27.600 2.20e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g4462 zf-C2H2_6 1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4462 - - cam:101511854 227.639