Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4448 ATGACAATCATCATGAGAAAAACATTGTTAACACTATTATTGTTATCATCAATTTTCTCAATAGCCAACTCATCAAAAAGAAGATCAAGATCTTCCAACAACAACATAGATTGGTGGTGTAACCAAACACCACACCCACAAGCATGCAAATACTACACAAAACAAACCCATTACTATCACAACAAAAACATCAAACACAAATCAAAATTCCGAGAGATTCTCATCCATTTAGCATTAGAAAGAGCAGTGATCATGCGAAACACAGCACGCGAATTCGGACAAAACAACTCGATCATAAACAAGAAACAGAAAACGGTTTCACGTGACTGTTTGAAACTCTACGACAACACAGTTTTTCATCTCAACCGAACATTCTCAAATCTCCATGTCAAGAAAACATGTTCCTCATTCGATGCACAAACATGGTTAAGCACTGCTTATACAAACATTGAAACATGTCGAAACGGGGCATTAGACTTAAACATTCCAAATTTCATCACACCAATTATGAAAGTAAACATGACAGAGATCATAAGCAATGGTTTGTTCATCAACTGGGAGTTCGTTAAACGCGACGGCCGTGTTCGTTACACCGACGATGTTAACGATGAGGCGTTTCCGAGGTGGTTTTCGGTTCGGGAGAGGAAGCTTCTGGAAAGTTCTAGGGTTATTAAGGCGAATCTTGTTGTCGCGAAAGATGGTTCGGGGCATTTTAGGAAAATTCAAGAGGCTATAAATGCTGCTGGGAGGAGAAGGATTAAGACAAGATTTGTTATACGTGTGAAGAGAGGGGTTTATAGAGAGAATATTGAAGTTGGGAAGATGAATGATAATATTATGTTGGTTGGTGATGGAAATAGGAACACGATAATAACAAGTAGTAGAAATGTTAAAGCTGGTTTTACTACCTATAGTTCTGCAACTGCTGGAATCGATGGTCTTCACTTCATTGCACGCGACATTACATTTGAAAATACCGCCGGACCTCATCGAGGTCAAGCAGTGGCGCTGAGATCGGCCTCTGACCTCTCTGTCTTTTATCGTTGTGCTTTTAAAGGCTATCAAGATACTCTTATGGTTCACGCACAACGTCAATTTTTTAGAGAATGCTACATCTATGGCACTGTCGACTTCATCTTTGGCAATGCAGCTGTAGTTTTTCAAAACTGTATAATTCTTGTAAGAAGACCTCTAAACGGCCAAGCAAACATGATCACAGCTCAAGGTCGAGATGATCCATTTCAAAACACTGGAATTTCAATTCATAACTCTCAGATTAGGGCCGCGCCAGATTTCAGGCCCGTTGTTGGAAAATTCAATACTTTCTTGGGCCGGCCTTGGCAAAGATACTCTAGAGTTGTGGTTATGAAATCATTCATGGATAATTTGATAAGCCCAATGGGTTGGTCTCCATGGGGAGGTAGTAATTTTGCTCAAAGCACTCTATTTTATGGAGAGTATAATAATTTTGGGCCGGGCTCATCAACAAGAAGTAGAGTAAGATGGCCTGGTTATCAAGTTATGAAAAGCCCAGCCCAAGCATCACCATTCACCGTTAATAGCCTCCTTGCTGGTGCCACGTGGTTACCTTCCACTGGTGTACCATTCACTTCTGGCCTTTAA 1623 0.4054 MTIIMRKTLLTLLLLSSIFSIANSSKRRSRSSNNNIDWWCNQTPHPQACKYYTKQTHYYHNKNIKHKSKFREILIHLALERAVIMRNTAREFGQNNSIINKKQKTVSRDCLKLYDNTVFHLNRTFSNLHVKKTCSSFDAQTWLSTAYTNIETCRNGALDLNIPNFITPIMKVNMTEIISNGLFINWEFVKRDGRVRYTDDVNDEAFPRWFSVRERKLLESSRVIKANLVVAKDGSGHFRKIQEAINAAGRRRIKTRFVIRVKRGVYRENIEVGKMNDNIMLVGDGNRNTIITSSRNVKAGFTTYSSATAGIDGLHFIARDITFENTAGPHRGQAVALRSASDLSVFYRCAFKGYQDTLMVHAQRQFFRECYIYGTVDFIFGNAAVVFQNCIILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDFRPVVGKFNTFLGRPWQRYSRVVVMKSFMDNLISPMGWSPWGGSNFAQSTLFYGEYNNFGPGSSTRSRVRWPGYQVMKSPAQASPFTVNSLLAGATWLPSTGVPFTSGL* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4448 540 SMART PMEI_2 31 184 IPR006501 GO:0004857
Psa7g4448 540 CDD PMEI-like_3 38 185 - -
Psa7g4448 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 185 IPR035513 -
Psa7g4448 540 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 178 IPR006501 GO:0004857
Psa7g4448 540 PANTHER PECTINESTERASE 6 539 - -
Psa7g4448 540 PANTHER PECTINESTERASE 6 539 - -
Psa7g4448 540 SUPERFAMILY Pectin lyase-like 223 539 IPR011050 -
Psa7g4448 540 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857
Psa7g4448 540 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Psa7g4448 540 Gene3D - 221 540 IPR012334 -
Psa7g4448 540 Pfam Pectinesterase 227 525 IPR000070 GO:0030599|GO:0042545
Psa7g4448 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 187 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4448 Psa-Chr7 365518458 365521810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4448 21 540 Carbohydrate Esterase AT3G47400 57.250 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4448 K01051 - gmx:100807908 822.002