Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4429 ATGGCATCAACATCTTGTGTTATCAAGAGTCCATTAGCTATGAAAGAGACGGGTTCAAGCTGTGGTCAGTATCCTCCTCCTATGGCAACGTATGAAGAGGTTGTGGACAATCCTAAGCTCTTTTTGCATAGCTTGGAGAAGCTCCATGCTACAATGGGCACCAAGTTCATGATTCCCATTATTGGGGGAAAGGAGTTGGATTTACACCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATTAAGGATAGAAAATGGAAAGATATAACTTTAGTTTTCAATTTTCCATCAACGGCAACAAATGCTTCTTTGTCTGCGGGAAATACATACTTCATTCTTCTACCATTATGA 363 0.4077 MASTSCVIKSPLAMKETGSSCGQYPPPMATYEEVVDNPKLFLHSLEKLHATMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKIIKDRKWKDITLVFNFPSTATNASLSAGNTYFILLPL* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4429 120 SMART ARID_2 32 118 - -
Psa7g4429 120 SMART bright_3 36 120 IPR001606 GO:0003677
Psa7g4429 120 ProSiteProfiles ARID domain profile. 35 120 IPR001606 GO:0003677
Psa7g4429 120 CDD ARID_HMGB9-like 37 118 IPR045303 GO:0003677
Psa7g4429 120 SUPERFAMILY ARID-like 33 115 IPR036431 GO:0003677
Psa7g4429 120 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 118 - -
Psa7g4429 120 Gene3D - 28 119 IPR036431 GO:0003677
Psa7g4429 120 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 118 - -
Psa7g4429 120 Pfam ARID/BRIGHT DNA binding domain 39 113 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4429 Psa-Chr7 364101928 364103012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4429 1 118 ARID Transcription Factor Family AT1G04880 55.085 2.46e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa7g4429 ARID 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4429 - - gmx:100807028 169.859