Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4425 ATGGTTTTCAACGAGAGGCCAACAAAGAGGATGAAAACAAGAGTCACTGCCGATCTTTATGATTTTCTCACTTTCCCTTTCGCCGGCGACTTCTCCGATGCTTTACCTTTTCGTAACCGTGTTCATCGTTTTCTTGCTGATCACGCTCGTGTCGCTTTTCCTCCCTCTCTTTTTCCCTCCCTGATGACGTGGCAGATCTTGTTCCGTGTTGGGGAAGTTGTTGATGGCTCTGATCTTTCGTCTGCTATGGTTACTCTTGACATTGTTGAAGAGGATGTTACTTGTTCTCGTAGTACTGTTTATTGTGACCAGTGCCGAGTTGTTGGATGGAGTGGTCATCCTGTATGTCGAAAGCGATTTCATTTCATAATAAGGTCTGGTAGTGATGCTGTTGAAGCATACCAAAGACCTTGTTCAAAATGTGGAGATCTTCTCCAATTATCTGAAGCAAGGTGTAAGACATGTAATCTTGACATCTGTGTTGATGATTTGGAGGATTGGTTGTATCTTCAAATTGAAGATAACACACATCTTCTGCATGGAGTTGTGCATTCTAATGGTTATGGTCACTTACTTACTCTTAATGGAAGAGAAGGTGGCTCAATGCATCTCTCGGGTTCTGATTTAATAGGTTTCTGGGATAGGCTCTGTGCTGCAATTTCTGTTAGGAAGGTTACTGTGATGGACTTGTCCAAGAAATTTGGTCTGGATTATCGTTTGCTTCATGCAATCACCAATGGGCATTCATGGTATGGCAATTGGGGTTATGAATTTGGAACTGGCTGCTATGGTCTTACCAAAGAAGCATACAAGAAGGCAGTTGATACGCTGTCCAACCTGCCCTTGTCCTCATTTTCATTCCAAGGTCGAGGACCCCAAAACCGTGTGCATACTGTTATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTCTAACGATTAAAGATCTCTTCTCCTTTTTGTTGAAATTGGTTAATAGAAAGCCTTCACAACATGAATTCACCAGTCCCATTAATATACTAGTTTCATGGACAAGAAATGAGGTTGAAGAAGTGCAACAAGCTTTGATCAAGGTATTGCTTGCATCAAGTGCATGTAACAAGGCCAAATGGGCTACAAGACGAACTCTTAAGGGGGCCGTAAGTATGCGGGTTAGATCCTCTGAGCTGGTAGACTATAGTCTTAAGCACTTGCCAGGGAAATTGGCTGCAAATGGAATGGTGGTTTGTTCGCGTTGCAATCCCACATCTAGTGCTGTTGAATTCAGGTTAGGACCTTTTACTAATGGATTTACCTCAAATTCAAGCTATCCTTCAAAAGAGCAAGTGATATCTGATTTGACATTCTTATTTAATACAATTATTCACCCTGAAAAAAAGTTCGGCTACAGACCAAAGATTATGAGGAAAACGATTGCTGATTCAGCCAGAACGCTTCTCGACTGTAAGCAGTTTATGAAGAATTATGAAGCTGATCATGTGATCACAGAAACGCCTACTGATATTAAGCTTTGGTGTCACGTGGAGCTTTCTGACCATCCTAAAGAGGACCAACCATCACCACCCCCAGAACTAATTGTGTTGCCTATAGATGCTACTGTTGATGACCTAAAAACTGAAGTCACTAGTGCTTTTCAAGAGGTATATGCAATGTACAAGAGGTTTCAAGCCGAGGAACTTCTAGGATATGGTAAAATCAGCAATTTATATACCCTGAAATTCCTTTTTGGAGCAAATACAAGTGTTCGAATTCTAGGAAAATGTCCTACAAAACATGGCCTAAGCCGATTCCGAAAGGAACGAGGAACAGAAGAGTGGAAGGTTGATTGCACTTGTGGTGCTAAGGATGATGATGGAGAAAAAATGTTAGCATGTGATACTTGTGGTGTCTGGCAGCATACGAGATGTGCGGGAATTGGTAGTTCTGCGCCTTCCAAATTTGAATGTAGGAGATGTGTAAGCTCTTACATGAAAACCAAAAAATACCCAATATCTTCTTCTAGTGAGACTTGTAAATTGAAAACATCTTGCAGAGATGAAGCGACTGCTGTAGCTTGTAATATAAATGTGAATTTTGGTGTACGTTGA 2088 0.4124 MVFNERPTKRMKTRVTADLYDFLTFPFAGDFSDALPFRNRVHRFLADHARVAFPPSLFPSLMTWQILFRVGEVVDGSDLSSAMVTLDIVEEDVTCSRSTVYCDQCRVVGWSGHPVCRKRFHFIIRSGSDAVEAYQRPCSKCGDLLQLSEARCKTCNLDICVDDLEDWLYLQIEDNTHLLHGVVHSNGYGHLLTLNGREGGSMHLSGSDLIGFWDRLCAAISVRKVTVMDLSKKFGLDYRLLHAITNGHSWYGNWGYEFGTGCYGLTKEAYKKAVDTLSNLPLSSFSFQGRGPQNRVHTVISLYQSLAETELLTIKDLFSFLLKLVNRKPSQHEFTSPINILVSWTRNEVEEVQQALIKVLLASSACNKAKWATRRTLKGAVSMRVRSSELVDYSLKHLPGKLAANGMVVCSRCNPTSSAVEFRLGPFTNGFTSNSSYPSKEQVISDLTFLFNTIIHPEKKFGYRPKIMRKTIADSARTLLDCKQFMKNYEADHVITETPTDIKLWCHVELSDHPKEDQPSPPPELIVLPIDATVDDLKTEVTSAFQEVYAMYKRFQAEELLGYGKISNLYTLKFLFGANTSVRILGKCPTKHGLSRFRKERGTEEWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIGSSAPSKFECRRCVSSYMKTKKYPISSSSETCKLKTSCRDEATAVACNINVNFGVR* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4425 695 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 671 - -
Psa7g4425 695 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 671 - -
Psa7g4425 695 Pfam PHD-finger 610 654 IPR019787 -
Psa7g4425 695 ProSitePatterns Zinc finger PHD-type signature. 610 652 IPR019786 -
Psa7g4425 695 SUPERFAMILY FYVE/PHD zinc finger 603 663 IPR011011 -
Psa7g4425 695 CDD PHD_MMD1_like 609 652 - -
Psa7g4425 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 659 IPR013083 -
Psa7g4425 695 SMART PHD_3 609 653 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4425 Psa-Chr7 363750841 363756380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4425 84 652 PHD Transcription Factor Family AT5G22260 28.478 2.16e-82 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa7g4425 PHD 4.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4425 - - gmx:100780558 1042.34