Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4406 ATGGCTATTGCTGGTCTGCACAGTGTATCTATGCTTGACTCTTCTTTACTGAGGGACTCGCAGTCTCAGGCTTCTCGAAGGAGGGGAGAGGGAAGAAGGGGAAGCACTCGGTCATCTTCACTTTTGCATATGTGGCGAGAGATTGAGGATGAACATGCTGTGAGTCAAGTTCAAGGTAGGCCTGGTGAAGTACTACTTGAACAAAGGAGCAATGGGTTGATTGCAGATCTTTCATTAGAAGAAACGCCTGATAGCCCAGAGATAGGACAAAGGAATGGTTTAGAAGATGCTGTTTTTGGTGAGAATGAGTCGGAAACATGGTCACAGTCACAAAGTCAGAATGAATCACATGATGGTCATGAGGATTTAAACAATTCTAGCTGTGAAAATTCTTCTGTTTTCGGAGAAGTTGAAAGGGAAAGAGTGAGACGAATTTTCAGGGAATGGATGAATAGCGGGTCTAGGGATTGTGGATCAACCATTTCCCGAAGAAGTAGCAGTCCAAGGAGAGAATGGCTTGGAGAAACTGAACAGGAAAGGGTGAGAGTTATAAGGGAGTGGGTACAAATGAGCAGCCAGCAGAGAAATGTTTCTTCTGGGGAAAACAGGGAACAGCCATGTGCTGAAATTGGTACACAACTTGAACGTGTGCGTGATGGATTTGTGGTTAACCATGGTGGTGGCCAAAGTGAACATATACTGAGGGGTATGCGTAAAATACGTGGCAGGCAGTTTATGCTCGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAGAGAGAAATTCAGGAATTGCTGGGCCTTCAGGCTGTATCTCGTTTTCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCCGCTGATCATAACAGGTCCACATCTGTAGCAGAAAGTGAATTAGGCCTATTGAGGCGAAAACAAACTGTATCAGGTCTAAGGGAAGGGTTCTTCTCTAGACTGGACAGTACCGGTTCCAGTCAAGCAACCAGCAACCTATCTGACACCTTGTCAGACATTGATATTGATTTTAATACAAATGAACAAGCCGGAGAAAGCAGTTCATGTATTGTCGTTGAAGCTAATAACCGAATAGGTAACAGTGCTGGGATATCTGGTGGCCACCGTCTAGAAGGAACTACACGTGAGAGTTTTGATTGGCAAGAATCTACTGTCCATGCAGATGGAAATCAGTTGCAGTGCTTGCAAATTGAATCAGTAGATGGACAGTCACCATCAGTCAGTGTTGTGTGCGAAAGAAGAGATGACACTGGGCAAAATGTTGATGTGGTGGCAATCAGAGATACAGCTAATGAACTTATCCAACAAAACTTACAAATTCATGATTCAGAGCATAGCAATAATCAGGAGTCCAGCGAGGTGCACATTGAGCAATCTGAGCTGGGTGATATAAGTATTGATGAAAACGATTCATCGAATCACCACGGTTATCCAGAGGGCAATGCTGTTAATAATGTTAATTATGGATCCATTGCTCTAGAAGAACCACTGGAAGATATTGTTGAAACTGAAGGAAATGGCTGGCATCAGAGTAACACTGAATGGAGAAATAACACTGATGAAAGTGTGGATGATAATCAGCTCAGCAATACAGCAGATGAGTGGGCTGAAAACATTTGGGCAAACGAGGATCGAGAAAACCCTCGTCTGCCAGAAGCTTCTGAAGTGTGGCAAGAGGATGGTGGCTTCCAAGAAGCGGTGGAAAATTGGTTGGGAGGACCTTCGAACCATGAAACCGCTCCAGGTGGTGGTAGAGTTCATAATTTTTATTTTCCTGATGATGACAATGTATACAGTGGTGAACTCAGGGAACTTCACAGTAGGAGACGTGTCTCTAATCTTCTCGGTAGTAGTTTCCGTGAGAGTCTTGACCAGTTGATACAATCATATATTGAAAGACAAGGTCATGCTAACATGGAGTGGGATATGGAAGAAGCAACCCCTTCTGCTGCTTTAGTAGAACAGAACCTTGAGCATCAGAGGAGAGATCAGATTGTTGATCAAGAGACTACTATTAATAGTTCACCTGACTTGCCCTCTTTGCATACACCTTCTACTCCGCCTCTTTGGGATCAGCATCCTCATGATGATAGCTGGGCACACAATGATGAATTGGAGATTATTAATGATTTGAGACTTGACATGGCTAGATTACATCAAAGAATGAATAGTATGCAGAAGATGCTTGAGACATGTATGGATATGCAGCTTGAATTGCAGCGCTCAATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCAGGTGATTCACCAGGAATACATGACTGCGATTCACCAGATGACAGTTCTAAATGGGAATGTGTGAAAAAAGGACTTTGCTGTATTTGCGGCGAAGGCAATATCGATTCTTTGTTGTACAGATGTGGGCACTTGTGCACATGTTCAAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAATGCCCAATGTGTCAAGCCCCTGTTTTGGAGGTGATACGAACTTATTCTATACTATAA 2538 0.4346 MAIAGLHSVSMLDSSLLRDSQSQASRRRGEGRRGSTRSSSLLHMWREIEDEHAVSQVQGRPGEVLLEQRSNGLIADLSLEETPDSPEIGQRNGLEDAVFGENESETWSQSQSQNESHDGHEDLNNSSCENSSVFGEVERERVRRIFREWMNSGSRDCGSTISRRSSSPRREWLGETEQERVRVIREWVQMSSQQRNVSSGENREQPCAEIGTQLERVRDGFVVNHGGGQSEHILRGMRKIRGRQFMLDMLKKAERERQREIQELLGLQAVSRFPHRNRIQALLRGRFLRNDRSADHNRSTSVAESELGLLRRKQTVSGLREGFFSRLDSTGSSQATSNLSDTLSDIDIDFNTNEQAGESSSCIVVEANNRIGNSAGISGGHRLEGTTRESFDWQESTVHADGNQLQCLQIESVDGQSPSVSVVCERRDDTGQNVDVVAIRDTANELIQQNLQIHDSEHSNNQESSEVHIEQSELGDISIDENDSSNHHGYPEGNAVNNVNYGSIALEEPLEDIVETEGNGWHQSNTEWRNNTDESVDDNQLSNTADEWAENIWANEDRENPRLPEASEVWQEDGGFQEAVENWLGGPSNHETAPGGGRVHNFYFPDDDNVYSGELRELHSRRRVSNLLGSSFRESLDQLIQSYIERQGHANMEWDMEEATPSAALVEQNLEHQRRDQIVDQETTINSSPDLPSLHTPSTPPLWDQHPHDDSWAHNDELEIINDLRLDMARLHQRMNSMQKMLETCMDMQLELQRSIRQEVSAALNRSGDSPGIHDCDSPDDSSKWECVKKGLCCICGEGNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVLEVIRTYSIL* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4406 845 PANTHER PROTEIN, PUTATIVE-RELATED 1 844 - -
Psa7g4406 845 Pfam Zinc finger, C3HC4 type (RING finger) 790 837 - -
Psa7g4406 845 Coils Coil 243 270 - -
Psa7g4406 845 Coils Coil 721 741 - -
Psa7g4406 845 MobiDBLite consensus disorder prediction 100 132 - -
Psa7g4406 845 MobiDBLite consensus disorder prediction 15 41 - -
Psa7g4406 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 843 IPR013083 -
Psa7g4406 845 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 844 - -
Psa7g4406 845 SUPERFAMILY RING/U-box 792 839 - -
Psa7g4406 845 CDD mRING-HC-C3HC5_NEU1 793 831 - -
Psa7g4406 845 ProSiteProfiles Zinc finger RING-type profile. 793 832 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4406 Psa-Chr7 361907779 361915443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4406 793 839 C3H Transcription Factor Family AT3G06140 42.553 2.23e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4406 - - gmx:100801329 1112.44