Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4404 ATGCTATCATCGTTTTTCAAACCGTGTTTCTCTCTTCAGTTATCTACCCGCATTTCCGTTAACTCTTCTTCTCTAATCCCTTTCAATTTCTCATTCCCTCTCTCTTCAACCCCTCGCCGCGCAATGTCAAAACCTCGACCCTCCGCCTTCGACGCCCTCATGTCCGGCGCACGCGCCGCCGCCGCTAAGAAGAAACCCCCTCCCCCTTCCTCATCTCCCAAGAAAAGAAAATCCCCTCCGCCTCCGCCTTCGCCGTCGCCTAAACCTCCTCAATCCACACTCTCCGCACCCGCTCAAAACCCTAATAGCAACGTCAAAACCCTAGAAATAGTTGAAACCGTTAAACAGGCTAATGAAACTGTTCAGGAAGAACCGCCGAGCAAGATCCGTAACACTTCATCTTCTCCTAAGGACGTAATCGCCGAATTGAAGGAACGAGTTCCGCAGCTGAAGAAGAAACCGTCGAGTTTTGATCCAAGTGAAGTTGCTTGCTGGGAGAAAGATAAACCTGTGCCGTTTTTGTTACTCTCTTTGGCGTTTGACATGATTGACGCAGAGAGTGGGAGGATTGTGATGACTGACATTGTGTGCAATCTGTTGAGGACTGTTATACACGCCGCACCCGAGGATCTTGTTTCGGTTGTTTATTTATCTGCAAACAGAATTGCTCCGGCTCATGTAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATTAAGGCGCTTGCTGAGGCCTATGGAAGGACCGAGAAACAGATTAAGAATCAGTACAAGGAAAAAGGTGACTTGGGCTTAGTTGCGAAAGCTAGCAGATCGTCACAGTCTATGATGCGGAAGCCCGAACCTTTGACTATTACAAAGGTGTTCAACACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAATTGACTGTGAACCTCTATACATAATCCGTTTGCTACAGTCGAAATTGCGAATTGGATACGCCGAGCAAACTCTATTAGCTGCATTAGGCCATGCTGCAGTGTACTCTGAAGAACATTCTAAACCGCCTCCTGAAATTCAGTCTCCTTATGAAGAGGCTGCTAAAATTGTTAAAAAAGTCTATTCTGTTCTTCCTGACTATGACAAAATTGTGTCTGCACTGCTTTCACATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCTGTTGGGCCTATGCTGTCAAAAGCAACCAAAGGTGTAGCAGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACATGTGAATACAAATATGATGGAGAACGTGCTCAGATACATTACTTGGAGAATGGCACAGTAGAGATTTACAGTAGAAATGCTGAACGAAACACTGGGAAGTTTCCTGATGTTGTTGCAGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCCTTTATCCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCTTTCCAGGTGCTTAGTACCCGGGCCCGCAAAAATGTCAGCATGAGTGACATAAAGGTTGAAGTTTGCATATTTGCTTTTGATTTGTTGTACCTCAATGGCCAAGCACTTCTTCAAGAAAACCTGAAAATCCGTAGAGAGCATCTCTATGGCTCTTTTGAGGAAGAGACTGGATTCTTTCAGTTTGCGACAACAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACGAAGCTATTGATGCAAGTTGTGAGGGATTAATTATTAAAACATTACATGAAGACGCCACATATGAGCCCTCCAAGCGGTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGATAATATAGGGGACTCGCTAGATCTGGTACCTATTGGTGCTTTTGCCGGTCGAGGGAAACGCACAGGAGTGTACGGTGCTTTTCTCCTTGCTTGCTATGACACCGATAGAGAAGAATTTCAAAGTCTTTGTAAGATAGGAACTGGATTCACAGAAAACGTGCTTGAAGAACGTTCTACTAGCCTTGGCTCTAAAGTGATTCCCAAACCAAAGTCATATTATCAATATGGAGAATCAGTCAAGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTAAAAGCCGCAGACCTGACCATTAGCCCTGTTTACCGAGCTGCAATGGGAACAGTGGACCCCAATAAGGGAATATCTCTGCGATTTCCACGTCTACTTCGAGTTCGGCCCGACAAAGCTCCGGAACAGGCTTCCTCTTCTGAGCAGATTGCTGAAATGTATAAGGCTCAGAAGCACAATCACAACGACATACAGGATGCCAGACAGAATGACGATGAAGATATTTAA 2373 0.4395 MLSSFFKPCFSLQLSTRISVNSSSLIPFNFSFPLSSTPRRAMSKPRPSAFDALMSGARAAAAKKKPPPPSSSPKKRKSPPPPPSPSPKPPQSTLSAPAQNPNSNVKTLEIVETVKQANETVQEEPPSKIRNTSSSPKDVIAELKERVPQLKKKPSSFDPSEVACWEKDKPVPFLLLSLAFDMIDAESGRIVMTDIVCNLLRTVIHAAPEDLVSVVYLSANRIAPAHVGLELGIGDASIIKALAEAYGRTEKQIKNQYKEKGDLGLVAKASRSSQSMMRKPEPLTITKVFNTFHLIAKESGKDSQEKKKNHIKSLLVAAIDCEPLYIIRLLQSKLRIGYAEQTLLAALGHAAVYSEEHSKPPPEIQSPYEEAAKIVKKVYSVLPDYDKIVSALLSHGVWELPKKCDFTPGVPVGPMLSKATKGVAEILNKFQDVEFTCEYKYDGERAQIHYLENGTVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVSMSDIKVEVCIFAFDLLYLNGQALLQENLKIRREHLYGSFEEETGFFQFATTTTSNDVEEIQKFLDEAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMDNIGDSLDLVPIGAFAGRGKRTGVYGAFLLACYDTDREEFQSLCKIGTGFTENVLEERSTSLGSKVIPKPKSYYQYGESVKPDVWFEASEVWEVKAADLTISPVYRAAMGTVDPNKGISLRFPRLLRVRPDKAPEQASSSEQIAEMYKAQKHNHNDIQDARQNDDEDI* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4404 790 MobiDBLite consensus disorder prediction 37 103 - -
Psa7g4404 790 Gene3D - 623 785 IPR012340 -
Psa7g4404 790 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 72 786 - -
Psa7g4404 790 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 438 446 IPR016059 GO:0003909
Psa7g4404 790 MobiDBLite consensus disorder prediction 769 783 - -
Psa7g4404 790 SUPERFAMILY Nucleic acid-binding proteins 626 772 IPR012340 -
Psa7g4404 790 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 230 770 IPR000977 GO:0003910|GO:0005524|GO:0071897
Psa7g4404 790 MobiDBLite consensus disorder prediction 752 790 - -
Psa7g4404 790 ProSiteProfiles ATP-dependent DNA ligase family profile. 520 656 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Psa7g4404 790 Gene3D - 424 622 - -
Psa7g4404 790 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 406 624 - -
Psa7g4404 790 MobiDBLite consensus disorder prediction 66 94 - -
Psa7g4404 790 Pfam DNA ligase N terminus 172 347 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa7g4404 790 Pfam ATP dependent DNA ligase domain 414 618 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Psa7g4404 790 ProSitePatterns ATP-dependent DNA ligase signature 2. 592 618 IPR016059 GO:0003909
Psa7g4404 790 Gene3D - 148 416 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa7g4404 790 CDD OBF_DNA_ligase_I 626 771 - -
Psa7g4404 790 Gene3D DNA ligase/mRNA capping enzyme 443 568 - -
Psa7g4404 790 CDD Adenylation_DNA_ligase_I_Euk 403 621 - -
Psa7g4404 790 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 154 404 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa7g4404 790 Pfam ATP dependent DNA ligase C terminal region 643 754 IPR012309 GO:0003910|GO:0006281|GO:0006310
Psa7g4404 790 PANTHER DNA LIGASE 1 72 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4404 Psa-Chr7 361841774 361850006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4404 3 776 Core DNA Replication Machinery Family AT1G08130 65.944 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4404 K10747 - gmx:100783155 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4404 7 361841774 361850006 Psa7g4404 7 361841774 361850006 ECH