Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4403 ATGAATCGACAACAATTTCATCGAAATACAAGTAGAAATTATTCTCATTTATATCATAGAGAAACTATGGAAGTCGCGTGTGGACCACGTCAACATGCTATGAACAATCGATCGATTCCTCATGTCCTTTATCCGACTCCTAATCCTTTTTATCGAGTTCGTGGTGGAAATCAACCTATGATGAATATCCAACCGACATATGATTATGTCCAAGATAATCACTTTATTCACCGTGAAAATAGCATCAACCATGCTCCAGTAAGAAGACACATAATACCTACCCAGAGATGGTTTGATACCATTCCCGAGAGAAATCAACCAAGGCAGAGTATCCGAAATGTCTTGCCAACTTATGCTTATGACCATGACAACCAATTTATTCACTACGAAAACAACACAAACCAGATCCCACTAAGGAGAGAGATAATACCTACTCAGAGATGGTATAACACGTATATGGAGAGAAATCAACCTAGGTTGAGGACTCGAGATGTCTTTCTAGATGATGTTTATGTCCAAGATGACCATTATATTCTTCATGAAAGCAACATGAACCAAACTCCAATAAGAAGATACATTTTACCTACCCATAGATGGTCTAACACCAATTTTGAGAGAAATCAACCTTGGTTGAGTACTCGAAATGTATACCCATTTGATGCTTATGTCCAAGATGACCACTTTATTTCTCACACAAACAACATCAACCAACATCCAACAAGAAGATACATTGTACCTGTCCATAGATGGCCTGACACTAATCTAGAGAGAAATCAACATAGGTTGAGTACTCGAGATGTCATTTTAGAGGATTTTTATGATCAAGATGATCAATATATTCTTCAAGAAAACAACATCAACCAAGCTCCAGTAAGAAGAGGCATTATACCTACCCAGAGAAGGACTAACACCAATCTTAGAAGAAATCGATCTAGGATGAATACTCAAGATGTATTGATAGACGATGCTTATGTCCAAGATGATCACTTTCCCGAAAGAAATATTAACGAAGCTTCGGTCAGAAGAGACACTGAAGTTACTAAGAGATGTGATCATATCAATCTTAAGATAATTCAAATTGAAGAAGGAACAAAAGATTCTGAAGCCATGACATGTTCAATTTGTCTTGTAGAACTTCTAGGTGGGTCAAAAGCTATCCAATTGCCTAGTCCATGTTTGCATGTCTATCATGAAAATTGTATTCTTAAATGGTTGGATATATCTAGCACTTGTCCTTTGTGTCGTAGATATGTTGGATGA 1260 0.3698 MNRQQFHRNTSRNYSHLYHRETMEVACGPRQHAMNNRSIPHVLYPTPNPFYRVRGGNQPMMNIQPTYDYVQDNHFIHRENSINHAPVRRHIIPTQRWFDTIPERNQPRQSIRNVLPTYAYDHDNQFIHYENNTNQIPLRREIIPTQRWYNTYMERNQPRLRTRDVFLDDVYVQDDHYILHESNMNQTPIRRYILPTHRWSNTNFERNQPWLSTRNVYPFDAYVQDDHFISHTNNINQHPTRRYIVPVHRWPDTNLERNQHRLSTRDVILEDFYDQDDQYILQENNINQAPVRRGIIPTQRRTNTNLRRNRSRMNTQDVLIDDAYVQDDHFPERNINEASVRRDTEVTKRCDHINLKIIQIEEGTKDSEAMTCSICLVELLGGSKAIQLPSPCLHVYHENCILKWLDISSTCPLCRRYVG* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4403 419 SMART ringv_2 371 415 IPR011016 GO:0008270
Psa7g4403 419 ProSiteProfiles Zinc finger RING-type profile. 372 415 IPR001841 -
Psa7g4403 419 SMART ring_2 372 414 IPR001841 -
Psa7g4403 419 PANTHER SI:CH211-59O9.10 361 418 - -
Psa7g4403 419 Pfam Ring finger domain 371 415 IPR001841 -
Psa7g4403 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKE 361 418 - -
Psa7g4403 419 CDD RING-H2_PA-TM-RING 371 415 - -
Psa7g4403 419 SUPERFAMILY RING/U-box 371 418 - -
Psa7g4403 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 419 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4403 Psa-Chr7 361770615 361772102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4403 368 415 C3H Transcription Factor Family AT4G12190 46.939 1.60e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4403 - - cam:101490108 83.5741