Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4402 ATGTTTCAATATTCAACTAAAATAGACACAATGGATTTTTATCAAGAGACACTTGCTCATGTTAATGATGGCTTTGAGCTACACGATTTCATTGAAGATCCAAACTTTGATCAATTCATCAACTTGATTCGTGGGGAAGAAAATGAAGATAGTACTATGTGTAACTTCAATTCTGACCTTATAATGAATCAAACCTTTGTTGATAACTCATTCCTTTCATTTCCTACAAACGCTTTTGATCCAACTTCTTCACTTGGCGCTTTCTCTTGTTTCCATGGAGAAGCTAAGGGGGAAATAGGAGAAGAAAATGATGGTGATGATGATGATTATTCTTCTCCAACAACAACTATTAACACAACTACTTCAAGTGGTGGTGATACTAAACATAGGTCGAAAACCGATAGGTCCAAGACTTTGGTTTCGGAGCGGAGGAGGCGAGGTCGAATGAAGGATAAGCTTTATGCATTGCGATCTTTGGTTCCCAATATAACTAAGATGGATAAAGCTTCTATAATTGGAGATGCTGTTTCATATATGCAAGAACTTCAATCCCAAGCCAAGAAGCTTAAGGCTGAGGTTTCTGGACTTGAAGCATCCATAGCAATGTCCAAAACTCATCAAGGATCAATTGAAAACCACAAAAAGATTCAATTCAATGAGAACACTAGTTCAATATGCAAGAAAATTGTCCAGATGGATATGTTTCAAGTGGATGAAAGAGGGTTTTATGTCAAAATAGTATGCAATAAAGGAGAAAGAGTGGCTGCTTCATTGTACAAGTCTCTTGAATCATTGAGAGATTTCAATGTTCAGAATTCAAATTTGGCCACAGTTTCTGATAATTTTCTACTTACTTTTTCATTCAATGTAAAAAATTCAGAGCCAATAATCAACCTGCCCAATTTAAAGCTATGGGTGATTGGAGCTTTTCTAAATCAAGGCTTTGAATTCTTGTCTTCTTTTTAA 966 0.3571 MFQYSTKIDTMDFYQETLAHVNDGFELHDFIEDPNFDQFINLIRGEENEDSTMCNFNSDLIMNQTFVDNSFLSFPTNAFDPTSSLGAFSCFHGEAKGEIGEENDGDDDDYSSPTTTINTTTSSGGDTKHRSKTDRSKTLVSERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYMQELQSQAKKLKAEVSGLEASIAMSKTHQGSIENHKKIQFNENTSSICKKIVQMDMFQVDERGFYVKIVCNKGERVAASLYKSLESLRDFNVQNSNLATVSDNFLLTFSFNVKNSEPIINLPNLKLWVIGAFLNQGFEFLSSF* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4402 321 MobiDBLite consensus disorder prediction 127 146 - -
Psa7g4402 321 Pfam Helix-loop-helix DNA-binding domain 141 183 IPR011598 GO:0046983
Psa7g4402 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 204 IPR036638 GO:0046983
Psa7g4402 321 MobiDBLite consensus disorder prediction 110 126 - -
Psa7g4402 321 MobiDBLite consensus disorder prediction 100 146 - -
Psa7g4402 321 Gene3D - 124 214 IPR036638 GO:0046983
Psa7g4402 321 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 21 318 - -
Psa7g4402 321 Coils Coil 179 199 - -
Psa7g4402 321 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 21 318 - -
Psa7g4402 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Psa7g4402 321 SMART finulus 139 188 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4402 Psa-Chr7 361748870 361751417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4402 17 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.481 3.71e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g4402 HLH 8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4402 - - gmx:100805451 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4402 7 361748870 361751417 Psa7g4402 7 361748870 361751417 ECH