Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4331 ATGTATAGCAATTTCAAGGAGCAAGCAATAGAATACGTGAAACAAGCTGTACAGGAAGATAATGCGGGAAACTACGCAAAAGCGTTTCCTCTATACATGAACGCGTTGGAGTATTTCAAAACGCATCTCAAGTACGAAAAGAATCCCAAAATTAAAGAAGCTATTACTCAGAAATTTACTGAGTATCTTCGTCGGGCTGAGGAGATCCGAACTGTTCTTGATGATGGCGGGCCGGGACCTGCTTCTAATGGAGATGCTGCTGTTGCTACGAAGCCCAAAACGAAGCCGAAGAATGGCGAGGGAGATGGAGAGGATCCTGAGCAGTCGAAGCTTAGGGCTGGCTTGAATTCTGCGATTGTGAGGGAGAAACCGAATGTGAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAGCAATCGTTGCAGGAAGCTGTTATCTTGCCTGTGAAGTTTCCTCAGTTTTTCACAGGTAAAAGACGTCCTTGGAGAGCATTTTTGCTGTATGGACCACCTGGAACAGGTAAATCATACTTGGCTAAGGCTGTTGCAACTGAAGCCGATTCTACATTTTTCAGTGTTTCTTCATCAGACCTCGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTTGAAATGGCTCGCGAAAGTGCACCTTCTATCATATTTGTTGATGAAATAGATTCTCTATGTGGTACGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGGGTTGGACACAATGATCAAAAAGTTCTCGTTCTTGCAGCAACAAATACACCATATGCTCTAGACCAGGCAATAAGGCGGCGTTTTGATAAGCGTATATACATTCCACTACCAGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGACACTCCTCATAATTTGACTGAAAGTGATTTTGAACACTTGGCTCGTAAGTCAGAGGGGTTTTCAGGTTCAGATGTATCTGTCTGCGTGAAGGATGTTTTGTTCGAACCTGTTCGTAAAACCCAAGATGCCATGTTTTTCTTTAAGAGTCCAGAAGGTATGTGGATACCATGTGGACAAAAGCAACAAAATGCAGTACAAATTACAATGCAAGATCTTGCCACACAGGGACTTGCTTCAAAGATCCTTCCTCCACCTATATCAAGAACCGATTTTGACAAAGTACTCGCTAGACAAAGGCCTACAGTAAGCAAATCTGACCTCGATGTTCACGAGAGATTCACCAAGGAGTTCGGAGAGGAAGGTTAA 1299 0.4349 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRTVLDDGGPGPASNGDAAVATKPKTKPKNGEGDGEDPEQSKLRAGLNSAIVREKPNVKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKSEGFSGSDVSVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGQKQQNAVQITMQDLATQGLASKILPPPISRTDFDKVLARQRPTVSKSDLDVHERFTKEFGEEG* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4331 432 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 432 - -
Psa7g4331 432 Pfam Vps4 C terminal oligomerisation domain 365 429 IPR015415 -
Psa7g4331 432 SMART AAA_5 161 297 IPR003593 -
Psa7g4331 432 SUPERFAMILY MIT domain 2 81 IPR036181 -
Psa7g4331 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 428 IPR027417 -
Psa7g4331 432 Pfam ATPase family associated with various cellular activities (AAA) 166 295 IPR003959 GO:0005524|GO:0016887
Psa7g4331 432 SMART smart 2 79 IPR007330 -
Psa7g4331 432 Gene3D - 6 75 - -
Psa7g4331 432 MobiDBLite consensus disorder prediction 95 109 - -
Psa7g4331 432 MobiDBLite consensus disorder prediction 71 110 - -
Psa7g4331 432 CDD AAA 132 295 - -
Psa7g4331 432 ProSitePatterns AAA-protein family signature. 267 286 IPR003960 GO:0005524|GO:0016887
Psa7g4331 432 Gene3D - 297 412 - -
Psa7g4331 432 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Psa7g4331 432 Gene3D - 124 420 IPR027417 -
Psa7g4331 432 PANTHER AAA DOMAIN-CONTAINING 1 432 - -
Psa7g4331 432 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4331 Psa-Chr7 352156126 352163586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4331 160 353 Calmodulin-binding Proteins AT3G56690 36.224 4.50e-35 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4331 7 352156126 352163586 Psa7g4331 7 352156126 352163586 ECH
Psa5g5905 5 509914832 509919817 Psa7g4331 7 352156126 352163586 ECH
Psa5g5905 5 509914832 509919817 Psa7g4331 7 352156126 352163586 PCT