Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4320 ATGGCTATGAACATGATGGAGTGTGATGTAGAAGACAATAATTTCATTGAGTGGCTCAAACCATCTACTTCATCTCTTTCATATCTAACTTCATCATCATCATCATCATCATCATCATCTTTTTCCACCACTCAAAATGATCTTGTTCTTGAGACTTTTCAATTCTTTCCTATTTTGAATGCAAAACCTTCAAAAGAGGTTCATCATGAAGTACCAAAAATGGAGGGTTTCGACGTGAAAGAAGAAAATATTACTGTGGCTTTGCATATTGGATTACCTAACCCTAAACAACATCTTGATGATGAGAAGAAGATTTTCCATGTTAAAGAACAAGAGATTTGTAAGAAAAGTTTTCAAAGGTTTTGGATACCAACTCCTGCACAGATTCTCATTGGACCTATGCAGTTTGTTTGCTCCATATGCAACAAAACCTTCGCTAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGACCAGACTCACTTAGAGGAACACAACCAGCTGCAATGCTAAGGCTTCCATGTTATTGTTGTGCTCAAGGTTGCAAGAATAACATTAATCATCCAAGAGCTAAGCCTTTGAAAGACTTTAGAACTCTCCAAACTCATTACAAAAGAAAACATGGGACAAAACCTTTTATGTGTAGGAAATGTGGGAAAGCATTTGCTGTCAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGCAAGTTGTGGTATTGTTCATGTGGTTCGGATTTTAAACACAAGAGATCTCTCAAAGATCATATTAGATCCTTCGGAAAGGGTCATAATCGACTTCTGAGTCCCGATGATCGAGCTTTTGATGTGGAGAAGGAATGTGTTATTGGTTCAGATATAAATGAAGTTGCTCCCATATGA 903 0.3754 MAMNMMECDVEDNNFIEWLKPSTSSLSYLTSSSSSSSSSSFSTTQNDLVLETFQFFPILNAKPSKEVHHEVPKMEGFDVKEENITVALHIGLPNPKQHLDDEKKIFHVKEQEICKKSFQRFWIPTPAQILIGPMQFVCSICNKTFARYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHNRLLSPDDRAFDVEKECVIGSDINEVAPI* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4320 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Psa7g4320 300 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 8 294 - -
Psa7g4320 300 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Psa7g4320 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 240 IPR013087 -
Psa7g4320 300 PANTHER ZINC FINGER PROTEIN WIP2 8 294 IPR043584 GO:0003700|GO:0010468
Psa7g4320 300 Gene3D Classic Zinc Finger 135 158 - -
Psa7g4320 300 Gene3D Classic Zinc Finger 179 269 - -
Psa7g4320 300 SMART c2h2final6 136 158 IPR013087 -
Psa7g4320 300 SMART c2h2final6 220 240 IPR013087 -
Psa7g4320 300 SMART c2h2final6 183 215 IPR013087 -
Psa7g4320 300 Pfam Zinc finger, C2H2 type 136 155 IPR013087 -
Psa7g4320 300 SUPERFAMILY beta-beta-alpha zinc fingers 206 240 IPR036236 -
Psa7g4320 300 SUPERFAMILY beta-beta-alpha zinc fingers 112 159 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4320 Psa-Chr7 351502514 351505614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4320 11 289 C2H2 Transcription Factor Family AT1G08290 53.963 1.12e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g4320 zf-C2H2_6 0.0001 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4320 - - gmx:100802773 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4320 7 351502514 351505614 Psa7g4320 7 351502514 351505614 ECH