Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4314 ATGCAAACGGGAAAGCCAAGTTCTTCAGCAGTTATTGGTAAGCATTCTGAGCCTGAAAAGCCAGTTGAATCTGATGAGAAGGTCAACCTCGAAGAAGAAAATGATCCTGAGGAAGAAATGGAAGAAGAGATTGAATATGAAGAAGTAGAAGAAGAGGAGGAAGTGGAAGAAATAGAAGAGGAGGTGGAAGAAGAAGAGGAGGACCCAGAGGAGGTAGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGTGGAAGAAGACACTGTGCCAACCCAAAACATTGATGATGATGAGAAGAAGAAACATGCTGAACTTCTTTCTCTTCCTCCTCACAAGTCTGAAGTTTACATAGGTGGCATTCCTCTTGATGCTGTAACGGAAGATTTAAAAGATTTTTGTGAGCGTATTGGGGAAGTTGTACAGGTTCGAATAATGAAAGGAAAAGATTCTTCGGAGAATAAGGGTTTTGCTTTTGTGCTTTTTAAGAATGTAGAACTGGCTTCTAGAGCCATTGAGGAGCTGAATAATACTGAATTTAAGGGTAAAAAAATAAGATGTTCTACATCTCAAGCAAAAAATCGTCTTTTTATTGGCAATATTCCTAGAAGCTGGGGCGATAACGATCTAAAAAAGGTTGTGAGTGAGATAGGACCTGGTGTTACCGCTGTTGAGCTAGTCAAGGATATGAAGAACATTATCAATAACCGCGGTTTTGCTTTTATTGACTATTATAATAATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAACCCAACATTTAAGCTTGGTGACAACTCCCCAACAGTGAGCTGGGCTGACCCGAAAAATGCTGATTCCTCTGCTTCATCTCAGGTAAAGGCAGTATATGTGAAGAACCTTCCTAAGAATGTAACTCAAGAGCAGTTGAAGCAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCACCAAAATCTGGTCAGGAAAAGAACAGAATCGGCTTTGTTCATTTTGCAGAGCGATCAAATGCTATGAAAGCACTAAAGAATACTGAAAGATATGAATTAGATGGTCGAATGTTAGAGTGTTCTCTAGCAAAGCCACAGGCTGATCAGAAGGCTGTAGTAACAAATACACTGAATCAAGGATTGCTTCCAAGTTATCCACCACATATTGGTTATGGTTTGGTTGGTAATCCCTATGGTGCACTTGGTGCTGGATATGGTGCTCCTGGTCTTGCACAGCCTTTGATGTATGGACCCGGTCAAACTCCCGCTGGAATGGCCATGATGCCGATGCTTCTGGCTGATGGACGCATTGGATATGTCTTGCAACAGCCAGGATTGCCTCCACAAACCCCGCCTTCACATCAAAGAGGTGGCAGGAGTAGTGGCGGTGGCAGTAGTGGTGGGAGTGGCAGCAGGAATACGGGCAGTTCAAGTAAGGGAAGGCACAGCAATGATAATGGTCATGGGCGAAGATACCACCCTTATTAG 1500 0.4327 MQTGKPSSSAVIGKHSEPEKPVESDEKVNLEEENDPEEEMEEEIEYEEVEEEEEVEEIEEEVEEEEEDPEEVEEEEEEEEEEEEEEEVEEDTVPTQNIDDDEKKKHAELLSLPPHKSEVYIGGIPLDAVTEDLKDFCERIGEVVQVRIMKGKDSSENKGFAFVLFKNVELASRAIEELNNTEFKGKKIRCSTSQAKNRLFIGNIPRSWGDNDLKKVVSEIGPGVTAVELVKDMKNIINNRGFAFIDYYNNACAEYSRQKMMNPTFKLGDNSPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQLKQLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGRMLECSLAKPQADQKAVVTNTLNQGLLPSYPPHIGYGLVGNPYGALGAGYGAPGLAQPLMYGPGQTPAGMAMMPMLLADGRIGYVLQQPGLPPQTPPSHQRGGRSSGGGSSGGSGSRNTGSSSKGRHSNDNGHGRRYHPY* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4314 499 PANTHER RNA RECOGNITION MOTIF 3 469 - -
Psa7g4314 499 Gene3D - 198 278 IPR012677 -
Psa7g4314 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 189 IPR000504 GO:0003723
Psa7g4314 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 262 IPR000504 GO:0003723
Psa7g4314 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 362 IPR000504 GO:0003723
Psa7g4314 499 SMART rrm2_1 118 191 IPR003954 GO:0003676
Psa7g4314 499 SMART rrm2_1 292 365 IPR003954 GO:0003676
Psa7g4314 499 SMART rrm1_1 118 191 IPR000504 GO:0003723
Psa7g4314 499 SMART rrm1_1 198 275 IPR000504 GO:0003723
Psa7g4314 499 SMART rrm1_1 292 365 IPR000504 GO:0003723
Psa7g4314 499 Gene3D - 13 197 IPR012677 -
Psa7g4314 499 Coils Coil 37 92 - -
Psa7g4314 499 MobiDBLite consensus disorder prediction 1 102 - -
Psa7g4314 499 MobiDBLite consensus disorder prediction 28 96 - -
Psa7g4314 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 279 IPR000504 GO:0003723
Psa7g4314 499 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 3 469 - -
Psa7g4314 499 Gene3D - 281 384 IPR012677 -
Psa7g4314 499 SUPERFAMILY RNA-binding domain, RBD 286 374 IPR035979 GO:0003676
Psa7g4314 499 SUPERFAMILY RNA-binding domain, RBD 117 283 IPR035979 GO:0003676
Psa7g4314 499 MobiDBLite consensus disorder prediction 457 486 - -
Psa7g4314 499 MobiDBLite consensus disorder prediction 451 499 - -
Psa7g4314 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Psa7g4314 499 CDD RRM_SF 119 191 - -
Psa7g4314 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4314 Psa-Chr7 351059634 351067324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4314 133 452 Eukaryotic Initiation Factors Gene Family AT4G34110 25.714 2.10e-15 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4314 7 351059634 351067324 Psa7g4314 7 351059634 351067324 ECH