Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4295 ATGTCGGGCACCCGAGCTCCTCCCGCCGCCTCTCCCTCCAATCCGCCGGACCAGATCATGAAACGACAACCGCCGTTTTCCTCCTTGAAACCTCCTTTTGTAGCTTCCGGAGATTATCACCGGTTTGCCCCTGACCACCGCAGAATTCTCGACCAAGAAACTGAAGCTATCGTCGTTAAGACTCCGCAATTGAAGCGGAAAAGTGAAGCAGCTGGTTTTGAAGCTGATTCAGGTGTTAGGATGACTCCTGGATCTACTGAAGCAGCCAATAGTCCTTCTCAGACGCCTGTATCCGGGAAGACGGGGAAGGGAGGCAAATCCTCTAAGCTGACAAAATGCAACAGATCTGGAATTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGAAATAATCTCACCCCTGCTGGTCCATGTCGATATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTCATCAATTTAATTAAACAAGCAGAGGATGGTATTCTTGATCTAAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAGAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGCTTGGATGTTTCAAAGCCAGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAATTGAAAATTTAACCATGGAGGAACGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTACGGGGTCTTAGTGAAGATGAAAATAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGAACCACTTTGGAAGTCCCTGATCCAGATGAGGCCGCTGATTATCCACAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATCAACGGTGTTGAGGTTACACCCAAAATTCCATCTAGTCCAGAAGTTAGCCAGCATCCATCAACTGTGGTCCCAGAGGACAAAGGGAAGGAAATAGAAGTGCAGAGACAAGACGGTGAAGGGCCTAGTTCAGATCTTACCAACAATCACGACTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGATGCCGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACCGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTCAACGCACTTCAAGAAGATTATTGTATGGCTCATGAGGACAATACAACCCCAAATCATCCTTTGAACATAGCTCGTGAGGACAATACATCCCCAAGTCATCCTTCAAACATAGGTGAAGTGTCTTCTGCAGCCAACCCTACTGTAGATTGA 1422 0.4473 MSGTRAPPAASPSNPPDQIMKRQPPFSSLKPPFVASGDYHRFAPDHRRILDQETEAIVVKTPQLKRKSEAAGFEADSGVRMTPGSTEAANSPSQTPVSGKTGKGGKSSKLTKCNRSGIQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFASLQAEIENLTMEERRLDEQIREMQERLRGLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAADYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVTPKIPSSPEVSQHPSTVVPEDKGKEIEVQRQDGEGPSSDLTNNHDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELNALQEDYCMAHEDNTTPNHPLNIAREDNTSPSHPSNIGEVSSAANPTVD* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4295 473 MobiDBLite consensus disorder prediction 1 131 - -
Psa7g4295 473 SUPERFAMILY E2F-DP heterodimerization region 219 322 IPR037241 -
Psa7g4295 473 SUPERFAMILY "Winged helix" DNA-binding domain 140 203 IPR036390 -
Psa7g4295 473 MobiDBLite consensus disorder prediction 83 131 - -
Psa7g4295 473 Gene3D - 134 207 IPR036388 -
Psa7g4295 473 Gene3D - 212 322 - -
Psa7g4295 473 MobiDBLite consensus disorder prediction 445 473 - -
Psa7g4295 473 MobiDBLite consensus disorder prediction 40 54 - -
Psa7g4295 473 PANTHER TRANSCRIPTION FACTOR E2F 18 450 IPR015633 GO:0000978|GO:0006357
Psa7g4295 473 CDD E2F_DD 216 322 IPR032198 GO:0046983
Psa7g4295 473 MobiDBLite consensus disorder prediction 338 358 - -
Psa7g4295 473 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Psa7g4295 473 Coils Coil 156 176 - -
Psa7g4295 473 Coils Coil 218 252 - -
Psa7g4295 473 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Psa7g4295 473 PANTHER TRANSCRIPTION FACTOR E2FB 18 450 - -
Psa7g4295 473 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4295 Psa-Chr7 349435434 349441197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4295 21 432 E2F-DP Transcription Factor Family AT5G22220 58.581 1.63e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Psa7g4295 E2F_CC-MB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4295 K06620 - gmx:100819817 739.569