Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4257 ATGGAGGATTACGGCAGCAGCGACGATGATTATCGCTACTCTGATCAAGAAGAATCTGATTGCGAATTATACGAAAACAACGATCAGAACTTTGAGTTACTCTCTTCCACTGCTCAGGTGATTACCGAGGAATCATTGCTAGCTGCACAGAAAGAGGACTTGCGGAGAGTGATGGACATGCTTTCTGTAAGGCAACATCATGCACGTACATTGCTGATATATCATCGCTGGGATGTGGATCATTTGTTTGAAGTTTATGTGGAAAAAGGGAAGGCATATATGTTTTCTCAGGCTGGTGTTAGTGTGGATGAATATCGTGACTCTAACTCACTTGTTAGTGCTTCAGTAATGTGTGAAATCTGCATGGACGACATTCCTAGTGATGAAGCAACAAGAGTGGATTGTGGTCACTGCTTTTGCAACTCCTGTTGGACACAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCTCACAAGTGTAATTCCATTTGTGATGAAGCTGTTGTAAGAACTCTACTCGGTAGAAAGCACCCTGATATGGCAGAGAAGTATGAACGGTTTCTTCTTGAATCCTACATCGAAGACAATAAAAGAGTTAAATGGTGTCCGAGCACGCCGCATTGTGGGAATGCAATTCGTGTTGAGGGTGATAAATTGTGTGAAGTAGAATGTTCGTGTGGCGATCAGTTTTGTTTTAATTGCTTGTCAGAAGCACACTCGCCCTGTTCATGTTTGATGTGGGAGCTTTGGGAAAAGAAGTGTCGGGATGAATCAGAAACTGTTAATTGGATAACGGTTCATACAAAAACTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGGGGTTGTAATTTGGTTAGCTGTATTTGTGGTCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGGGAGCATACTTGGTCAAGTATAGCAGGTCACAGCTGTGGTCGCTACAAAGAACAAGAGAAAACAGCTGAACGGGCAAAGAGGGATCTGTATAGGTACATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGATAGCATACGAGGGAGGATTTCTATATCGGAAGAAACAAAAAGTTCTGAACTCAGTGATTATAGCTGGGTACATAATGGACTCTCTAGACTTTTCAGATCTAGGCGTGTCCTTTCATACTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGAAGAAATGTCAGAAGCTGAAAGGGAAATCAAACAGAACTTATTTGAGGATCAACAGCAGCAGTTTGAGTCAAATGTTGAAAAACTCTCTAAGATGCTGGAGGAGCCTTTCGATACTTTTGAATATGATAAGGTTATGGAGATAAGAATGCAGATAATAGATCTAACAACTCTGATTGATGGTCTTTGTAAAAAAATGTATGAGTGCATCGAGAATGATCTATTGGGTTCTATTAATCTTGGTACTATCCACAGTATAGCACCTTATAGATCAAAGGGCATAGAGAAAGCTTCAGAACTTCAAGTTTGTTGGAGCAATAAAGCCAACAATACGGGTAAGAGTACTATCAACAGTATAGCACCATATATTGACTGCAGTACATCAGTTGTCATTGCTGTGACTCAACACATATTTTATGATCATGTTGGATTCTTAATATATAAACTAATATGTCTCGTTAACATTGTTGTGTCTTAA 1737 0.3984 MEDYGSSDDDYRYSDQEESDCELYENNDQNFELLSSTAQVITEESLLAAQKEDLRRVMDMLSVRQHHARTLLIYHRWDVDHLFEVYVEKGKAYMFSQAGVSVDEYRDSNSLVSASVMCEICMDDIPSDEATRVDCGHCFCNSCWTQHFIVKINEGQSKRIRCMAHKCNSICDEAVVRTLLGRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEGDKLCEVECSCGDQFCFNCLSEAHSPCSCLMWELWEKKCRDESETVNWITVHTKTCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKDSIRGRISISEETKSSELSDYSWVHNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMSEAEREIKQNLFEDQQQQFESNVEKLSKMLEEPFDTFEYDKVMEIRMQIIDLTTLIDGLCKKMYECIENDLLGSINLGTIHSIAPYRSKGIEKASELQVCWSNKANNTGKSTINSIAPYIDCSTSVVIAVTQHIFYDHVGFLIYKLICLVNIVVS* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4257 578 SUPERFAMILY RING/U-box 189 257 - -
Psa7g4257 578 Pfam IBR domain, a half RING-finger domain 189 251 IPR002867 -
Psa7g4257 578 Gene3D - 247 495 - -
Psa7g4257 578 ProSiteProfiles Zinc finger RING-type profile. 118 166 IPR001841 -
Psa7g4257 578 Pfam Ariadne domain 328 534 IPR045840 -
Psa7g4257 578 CDD RING-HC_RBR_TRIAD1_like 118 167 - -
Psa7g4257 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 203 IPR013083 -
Psa7g4257 578 ProSiteProfiles TRIAD supradomain profile. 114 328 IPR044066 -
Psa7g4257 578 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 515 IPR031127 GO:0004842|GO:0016567
Psa7g4257 578 SUPERFAMILY RING/U-box 116 201 - -
Psa7g4257 578 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED 5 515 - -
Psa7g4257 578 SUPERFAMILY RING/U-box 258 316 - -
Psa7g4257 578 SMART ibrneu5 189 251 IPR002867 -
Psa7g4257 578 SMART ibrneu5 259 324 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4257 Psa-Chr7 346216552 346221696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4257 58 548 ARIADNE family AT2G16090 68.283 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4257 K11968 - gmx:100783343 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4257 7 346216552 346221696 Psa7g4257 7 346216552 346221696 ECH