Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4239 ATGAGTGAGAGTAAGGTAGTTGAAGCAAAGCCTCAAAAAAACATTCAAGATTTCGATTCTAAGAAGAAACCTAAGCGAAACAGTTATGCTTTTGCTTGTGCTATGTTAGCTTCCATGACTTCCATTTTACTTGGATACGATATTGGTGTTATGAGTGGAGCTGCAATCTACATAAAAAGAGATCTTAAAGTATCGGACACACAGATTGAGGTTATGATGGGAATCATTAACATCTACTCTCTCATAGGTTCGTGTCTTGCCGGCAGAACCTCCGATTGGATTGGTCGCCGTTACACCATCGTTTTCGCCGGTGCTATCTTCTTCGTTGGAGCCTTACTCATGGGTTTCTCACCAAACTATGCTTTCCTCATGTTTGGCCGTTTCATTGCCGGAATTGGCATCGGCTACGCACTCATGATTGCCCCGGTTTACACCGCTGAAGTCTCCCCCGCTTCCACCCGCGGCTTCCTCACTTCTTTTCCAGAGGTTTTCATAAACAGTGGAATATTACTTGGGTACGTATCAAACTTTGCATTTTCAAAACTATCCCTTCAATTAGGTTGGAGAATGATGCTTGGAGTTGGAGCAATTCCTTCCGTCATCCTAGCCGTCGGAGTATTAGCCATGCCAGAGTCGCCGCGATGGCTCGTAATGAGAGGCCGTTTAGGAGACGCAATAAAAGTACTCAACAAAACCTCAGATTCCAAAGAAGAGGCTCAGCTTAGATTAGCCGAGATAAAACAAGCCGCCGGAATACCGGAAGATTGCAACGACGATGTTGTTCAGGTAAAAACCAAAAACACCGGTGAGGGTGTATGGAAAGAGCTTTTCGTTTATCCTACACCCGCAGTTCGTCATATTGTTATAGCAGCACTAGGGATTCATTTCTTCCAACAAGCATCCGGTATAGACGCCGTCGTTTTGTACAGTCCTAAAATCTTCGAAAAAGCTGGGATCAGCGGTGACACGCATCTTCTTCTTGCAACGATAGCCGTTGGATTTGTTAAAACAGTGTTTATCTTAGTGGCTACTTTTAACTTAGACAGATTCGGTCGTCGTCCGATGTTGTTAACGAGTGTCGGAGGTATGGTGATCTCGCTTCTCACACTCGCTGTCAGCCTCACGATCATTGATCATTCGAAAACGAAACTAATCTGGGCCATTGCATTGAGTATAGCAACTGTTTTGTCTTATGTTGCGACGTTTTCGATAGGTGCGGGACCCATCACGTGGGTGTATAGTTCTGAGATATTTCCTTTGAGATTGAGGGCACAAGGTGCAGCTATGGGTGTTGTGGTGAATAGGGTTACTAGTGGGGTTATTTCAATGACGTTTTTGTCCTTGGAAAAAGCGATTACTATTGGAGGAGCTTTTTTTCTCTTTGGAGGTATTGCTACAATTGCGTGGATATTCTTTTATATTATGCTTCCTGAAACACAGGGGAAAACACTTGAAGAAATGGGCGAGTCTTTTGGGAAAATTTGGGCGAAACCGAAGAATGCTAAGGGAGTTGAGGATGGTAATGATCGTGTATCACAAGTTCAGTTAGGGACCAACGTTTCAACTTGA 1569 0.4398 MSESKVVEAKPQKNIQDFDSKKKPKRNSYAFACAMLASMTSILLGYDIGVMSGAAIYIKRDLKVSDTQIEVMMGIINIYSLIGSCLAGRTSDWIGRRYTIVFAGAIFFVGALLMGFSPNYAFLMFGRFIAGIGIGYALMIAPVYTAEVSPASTRGFLTSFPEVFINSGILLGYVSNFAFSKLSLQLGWRMMLGVGAIPSVILAVGVLAMPESPRWLVMRGRLGDAIKVLNKTSDSKEEAQLRLAEIKQAAGIPEDCNDDVVQVKTKNTGEGVWKELFVYPTPAVRHIVIAALGIHFFQQASGIDAVVLYSPKIFEKAGISGDTHLLLATIAVGFVKTVFILVATFNLDRFGRRPMLLTSVGGMVISLLTLAVSLTIIDHSKTKLIWAIALSIATVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGAAMGVVVNRVTSGVISMTFLSLEKAITIGGAFFLFGGIATIAWIFFYIMLPETQGKTLEEMGESFGKIWAKPKNAKGVEDGNDRVSQVQLGTNVST* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4239 522 ProSitePatterns Sugar transport proteins signature 2. 129 154 IPR005829 GO:0016021|GO:0022857|GO:0055085
Psa7g4239 522 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 16 512 IPR045262 GO:0015144
Psa7g4239 522 ProSitePatterns Sugar transport proteins signature 1. 87 104 IPR005829 GO:0016021|GO:0022857|GO:0055085
Psa7g4239 522 PANTHER SUGAR TRANSPORTER 16 512 - -
Psa7g4239 522 SUPERFAMILY MFS general substrate transporter 19 487 IPR036259 -
Psa7g4239 522 TIGRFAM SP: MFS transporter, sugar porter (SP) family 22 487 IPR003663 GO:0016020|GO:0022857|GO:0055085
Psa7g4239 522 Pfam Sugar (and other) transporter 34 491 IPR005828 GO:0016021|GO:0022857|GO:0055085
Psa7g4239 522 CDD MFS_PLT 36 487 IPR044776 GO:0005351
Psa7g4239 522 ProSiteProfiles Major facilitator superfamily (MFS) profile. 33 480 IPR020846 GO:0022857
Psa7g4239 522 PRINTS Sugar transporter signature 41 51 IPR003663 GO:0016020|GO:0022857|GO:0055085
Psa7g4239 522 PRINTS Sugar transporter signature 124 143 IPR003663 GO:0016020|GO:0022857|GO:0055085
Psa7g4239 522 PRINTS Sugar transporter signature 298 308 IPR003663 GO:0016020|GO:0022857|GO:0055085
Psa7g4239 522 PRINTS Sugar transporter signature 392 413 IPR003663 GO:0016020|GO:0022857|GO:0055085
Psa7g4239 522 PRINTS Sugar transporter signature 415 427 IPR003663 GO:0016020|GO:0022857|GO:0055085
Psa7g4239 522 Coils Coil 229 249 - -
Psa7g4239 522 Gene3D MFS general substrate transporter like domains 23 493 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4239 Psa-Chr7 344297568 344300643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4239 22 519 Organic Solute Cotransporters AT3G18830 73.852 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4239 - - lja:Lj3g3v3338420.1 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4239 7 344297568 344300643 Psa5g6685 5 557538762 557542571 PCT