Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4227 ATGTTACACTGTCTCAACACTTCGGGTAATCTAGCAGGAGGAGAAGAAACAACCATTTCCGACATGACAGTGTTACAAAGACAAAAAGCAAGAATCAACTTTCAACAATTTTCTTCTTCTCAACAATTTATGATGGTTGCTTGTGATTCCGCTCTTGGAGAAGTAGTTGCCAACTCTATCAAACCCGACCCGAGTTTCGGAAAAGATACCGTTAAAAAAAGAAAAGCTGAAATTAACAATAATAATAGTAACAATTCTAAGGTTGATGTTATTGTTCCGGAGTGTGACAAGAGGATCAAAGTGAGTGCAGATGAAGAGGAATCCAAAACCAGTGACCAAATTTCAAAGGGACACAAGAATACAAAGGCTAACAATGGAACAAAAAACAACAGAGAAAATTCTGGTGATACTAATTCTAAGGAAAAGCTTGATTACATTCATGTTCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGTTTAGCAGAAAGAGTTAGAAGGGAAAAAATAAGCGAGAGGATGAAGTATTTACAAGATTTAGTGCCGGGATGCAACAAAATTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCGATGAAATTAGCAGCTGTAAATCCAAGACTTGACTTCAACATTGATGAATTGTTTACCAAAGAGGTTTTTCCTCAAAATTTTCCGACCATAGGGATGCAATCAGACATGACTAACCCTACATATCTTCAATTCAATTCATCACAACAACTAGTTTCGAGTTGTGGTGGATTAATAAACAATATGGGGATAATCCCTCCGGAAATCGGGCTTCGGAGGAACATTAATATCCCCGCAGCTTCATCTTTACCCGAAATCTTTGACTCGTCATGTTTCACCCATATCTTACCCTCTTCATCTTGGGAAGGTGATTTTCAAAACCTTCACAGTATGGATTTTGATCAAGGAAGATCAATGTGCTTTCCTTCTCAGCCATTCACAGGCATGGTTGAAGCTAGCAATTTGAAGATGGAGATGTAA 1053 0.3827 MLHCLNTSGNLAGGEETTISDMTVLQRQKARINFQQFSSSQQFMMVACDSALGEVVANSIKPDPSFGKDTVKKRKAEINNNNSNNSKVDVIVPECDKRIKVSADEEESKTSDQISKGHKNTKANNGTKNNRENSGDTNSKEKLDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFTKEVFPQNFPTIGMQSDMTNPTYLQFNSSQQLVSSCGGLINNMGIIPPEIGLRRNINIPAASSLPEIFDSSCFTHILPSSSWEGDFQNLHSMDFDQGRSMCFPSQPFTGMVEASNLKMEM* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4227 350 MobiDBLite consensus disorder prediction 102 140 - -
Psa7g4227 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 223 IPR036638 GO:0046983
Psa7g4227 350 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 53 330 - -
Psa7g4227 350 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983
Psa7g4227 350 CDD bHLH_AtBPE_like 144 229 - -
Psa7g4227 350 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 53 330 IPR024097 GO:0006355
Psa7g4227 350 SMART finulus 160 210 IPR011598 GO:0046983
Psa7g4227 350 MobiDBLite consensus disorder prediction 102 116 - -
Psa7g4227 350 MobiDBLite consensus disorder prediction 117 133 - -
Psa7g4227 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983
Psa7g4227 350 Gene3D - 151 225 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4227 Psa-Chr7 343349002 343353125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4227 9 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.227 1.33e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g4227 HLH 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4227 - - gsj:114373950 396.741