Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4183 ATGGAAATTGTGGAGGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAGTCTGTTTTTTCACAAACGATTAGCGAGGAGATTTTGTGTTTGAACGCGAATAACGTTGTTGTCGGTGAAGATTTTTCTGTCGATGACTTGCTTGATTTTTCAAACGGCGAATTTCAACATGGTTCTGTCGGAAAAGAAATTTATAATTACGAGGAGGAAGAAGAAGAACATGAGAAAAACAGCACCACCTCTGGCTCTGAGCATGACCGAACAGAAGACGACGGAAATTCTAATTCCATAATGTTTTCCGGTAACGGCGAGTCTGACTCCATTTTTGCCGGCGAATTAGCAGTTCCGGCTGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGATGACTCTTTGCCGGAGCTTTCTCTATTGTGTCCGGTTCAAGCCCGGGTTGAACCGGAACCTAGACCAGGCCCAAGCCCAAGCCCAACCAAAGCTACTTCTCATCTCACTTTAATCCGCAGAAAGCCTAGAACCAACAAGACTAGAAGGCCCAACTGTAACATGTGGTCATTCAACCCTATTCTGTGTAGAGCAAAGAAGCAGAGGAAAAAGCCCGAGGCCCAAACGGGTGGAGCTCAGGTTCAGAGACGGTGCAGCCACTGCCAGGTACAAAAAACGCCACAATGGAGAACCGGTCCGCTTGGACCCAAAACACTATGTAACGCTTGTGGTGTTCGGTATAAGTCCGGTAGGCTTTTCCCGGAGTATAGACCGGCTTCGAGTCCGACGTTTTCCGGAAATATCCACTCGAACAGCCACCGTAAGGTTCTGGAGATGAGGCGGAGGAAGGAGACGGAAACGGAAGAATCGGTATCCGGTCTGAACCGGAATCAAATGGCGTCGAGTTGGTGA 900 0.4844 MEIVEAEALKPSLRTESVFSQTISEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIYNYEEEEEEHEKNSTTSGSEHDRTEDDGNSNSIMFSGNGESDSIFAGELAVPADDVADLEWVSHFVDDSLPELSLLCPVQARVEPEPRPGPSPSPTKATSHLTLIRRKPRTNKTRRPNCNMWSFNPILCRAKKQRKKPEAQTGGAQVQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPASSPTFSGNIHSNSHRKVLEMRRRKETETEESVSGLNRNQMASSW* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4183 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 271 - -
Psa7g4183 299 MobiDBLite consensus disorder prediction 276 299 - -
Psa7g4183 299 MobiDBLite consensus disorder prediction 67 93 - -
Psa7g4183 299 PIRSF Txn_fac_GATA_plant 20 299 IPR016679 GO:0003677|GO:0005634|GO:0045893
Psa7g4183 299 Gene3D - 207 259 IPR013088 GO:0006355|GO:0008270
Psa7g4183 299 ProSiteProfiles GATA-type zinc finger domain profile. 208 244 IPR000679 GO:0006355|GO:0043565
Psa7g4183 299 CDD ZnF_GATA 213 270 IPR000679 GO:0006355|GO:0043565
Psa7g4183 299 SMART GATA_3 208 258 IPR000679 GO:0006355|GO:0043565
Psa7g4183 299 MobiDBLite consensus disorder prediction 67 91 - -
Psa7g4183 299 PANTHER GATA TRANSCRIPTION FACTOR 193 295 - -
Psa7g4183 299 PANTHER GATA TRANSCRIPTION FACTOR 3 191 - -
Psa7g4183 299 PANTHER GATA TRANSCRIPTION FACTOR 193 295 - -
Psa7g4183 299 PANTHER GATA TRANSCRIPTION FACTOR 3 191 - -
Psa7g4183 299 ProSitePatterns GATA-type zinc finger domain. 214 239 IPR000679 GO:0006355|GO:0043565
Psa7g4183 299 Pfam GATA zinc finger 214 247 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4183 Psa-Chr7 340337151 340339596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4183 40 279 C2C2-Gata Transcription Factor Family AT4G36240 44.094 2.31e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa7g4183 GATA 3.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4183 - - gmx:100776188 358.221