Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4170 ATGGCTATTAAGAAATACTCTAACAAACTTCCTCAACATGCAGTTTTGAAACAAATCCTTAAAAGATGTTCAAGCCTAGGGAAGAAAAACGAGTACGACGATAATGAATACCCCATTGATGTACCAAAAGGTCATTTCCCTGTTTACGTTGGTGAAAACCGTAGTAGATATATTGTTCCAATCTCTTTCTTAACTCACCCCGAGTTTCAATCTCTTCTTCGTCAAGCTGAAGAAGAATTTGGATTCGACCATGATATGGGTCTTACCATTCCTTGTCAAGAAGTTGTTTTTCAGTCACTAACATCCATGATAAGATGA 318 0.3711 MAIKKYSNKLPQHAVLKQILKRCSSLGKKNEYDDNEYPIDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLRQAEEEFGFDHDMGLTIPCQEVVFQSLTSMIR* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4170 105 Pfam Auxin responsive protein 28 104 IPR003676 GO:0009733
Psa7g4170 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 105 IPR003676 GO:0009733
Psa7g4170 105 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4170 Psa-Chr7 339364422 339365909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4170 20 105 Calmodulin-binding Proteins AT3G43120 46.512 2.45e-20 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4170 K14488 - oeu:111410569 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4170 7 339364422 339365909 Psa7g4170 7 339364422 339365909 ECH
Psa7g4170 7 339364422 339365909 Psa2g3522 2 385833050 385834219 ECH
Psa7g4170 7 339364422 339365909 Psa4g2297 4 187093653 187093970 ECH