LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g4110	ATGCTTCAAAGCTTGGTCCCTCGACCCCCTCTCACTTCTAAACCTAATATGAACACAAAACGCCCTGAACGCGAACACGACGACGCCGATTCTTCCCTTCCGGTACAATCTTTCAAAAGACCTAACTACTCCGGCGAGAAGACAGTGGCGGAAGGCGAAGGACACGACGAGGAGCAAGCGTTTGAGCCTACAACTGAAGGTGAATCCATTGGTTTGAAACTCCTAGGGCTTTTACTCCAATGCGCTGAGTGTGTTGCCATGGATAACCTCGACTTTGCTAATGATCTCTTACCGGAGATAACCGAACTCTCCTCACCGTTCGGGACTTCACCGGAGCGGGTCGGTGCTTACTTCGCACAGGCTCTACAAGCGCGAGTTGTGAGCTCTTGCCTTGGTAGTTACTCGCCGTTAACGGCTAAATCGGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCGTTTCAATCCTACAACTCGGTTTCACCGCTGGTGAAATTCTCGCACTTCACAGCTAATCAAGCTATCTTCCAAGCCGTGGACGGTGAGGATCGTGTCCATATCATCGACCTTGATATCATGCAAGGACTTCAATGGCCAGGATTGTTTCACATCCTCGCTTCACGATCCAGGAAGATCCGCTCCGTGAGAATCACCGGTTTCGGATCTTCCTCAGAGCTTCTCGAATCAACGGGAAGAAGACTTGCCGATTTCGCGAGTTCACTCGGACTTCCGTTTGAGTTTCATCCTATTGAAGGCAAAATCGGAAGCGTAACGGAACCGAGTCAACTCGGTGTTAGACCAAACGAAGCCATCGTGGTTCACTGGATGCACCATTGCTTGTACGATATAACCGGAAGCGATTTAGGAACGTTGAGATTGCTGACTCAGCTTAGGCCAAAGCTAATCACCACCGTTGAACAAGATCTTAGCCACGCTGGTAGCTTCCTCGCGAGGTTCGTGGAGGCTTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTGCGGACAGTGTTGAGAGGCATATGGTGGAGCAGCAGCTGTTGGGGTGTGAGATAAGGAACATTATCGCCGTGGGTGGGCCCAAGAGGACTGGTGAGGTGAAAGTTGAGAGATGGGGGGATGAGTTGAAACGGGCCGGGTTTCGACCCGTTTCGCTTCGGGGCAACCCGGCTGCACAAGCGAGTTTGTTGTTGGGGATGTTTCCTTGGAGAGGGTATACACTTGTGGAGGAGAATGGTTCTTTGAAGCTTGGTTGGAAAGATCTTTCTCTTTTGATTGCGTCTGCTTGGCAACCGTCTGATTTGATTACTTACACTTGA	1332	0.5083	MLQSLVPRPPLTSKPNMNTKRPEREHDDADSSLPVQSFKRPNYSGEKTVAEGEGHDEEQAFEPTTEGESIGLKLLGLLLQCAECVAMDNLDFANDLLPEITELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQAVDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSVRITGFGSSSELLESTGRRLADFASSLGLPFEFHPIEGKIGSVTEPSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSVERHMVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYT*	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g4110	443	MobiDBLite	consensus disorder prediction	18	33	-	-
	Psa7g4110	443	MobiDBLite	consensus disorder prediction	1	64	-	-
	Psa7g4110	443	MobiDBLite	consensus disorder prediction	1	17	-	-
	Psa7g4110	443	ProSiteProfiles	GRAS family profile.	65	435	IPR005202	-
	Psa7g4110	443	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	50	436	IPR005202	-
	Psa7g4110	443	Pfam	GRAS domain family	76	435	IPR005202	-
	Psa7g4110	443	PANTHER	SCARECROW-LIKE PROTEIN 23	50	436	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g4110	Psa-Chr7	336384913	336387455	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g4110	17	438	GRAS Transcription Factor Family	AT5G41920	65.105	0.0	536

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Psa7g4110		GRAS	8.6e-115	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g4110	-		-	gmx:100816249	752.281