Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4105 ATGGAAGCTATCTTCGTTACCAAACCAATTTCTCACTTGAAACCCAAACACTCTCTACCTCCCAAAAACCCATTTCTCTCCCACCACCAATCTCTCCCTTTCCGCCACAAACCTACCTACTTCCCCACCGTCACCGCCGCAATTCAAAACCAGCAACAACAGGAAACAACTCCCAAGAACATCGAAGATGAATCCTACGGCGAAGTAAAAAAAATCATCGGAAGCAAAGCACTCCAAGACTCCACCGGCATGGAGTATCTCATCGAATGGAAAGACGGACATGAACCCTCCTGGGTTCCCGCCGACTTCATAGCAAAAGACGTTCTCTCCGAATACGAAACTCCCTGGTGGAACGCAGCCAGAAAAGCCAACGAAGCCGAAATCAAAAAAATTCTCGAAGCCGACGACGGCCGTGACGTGAACGCCGTGGACACCGACGGAAGAACCGCGCTTCTCTTCGTGGCGGGACTCGGCTCGGAGCCTTGCGTTAAGCTTCTAGCAGAAGCCGGCGCGAATCTCGACCATCAAGACAACAGCGGCGGCTTATCCGCGCTTCACATGGCAGCCGGATACGTAAGATCGGGACTCGGCTCGGAGCCTTGCGTTAAGCTTCTAGCAGAAGCCGGCGCGAATCTCGACCATCAAGACAACAGCGGCGGCTTATCCGCGCTTCACATGGCAGCCGGATACGTAAGACCTGGGGTCGCGAAGCTGCTTCTGGACCTCGATGCGGATCCTGAAATCAGCGACGATCGCGGAAGAACTGCGTTGGAACTAGCAAGAGAGTTGTTGAAAGCGACGCCGAAGGGGAATCCGATGCAATTCGGGCGGAGAATGGGGTTGGAAGGTGTGGTTAAGGTTTTGGAAGGAGCGGTGTTTGAGTATTCTGAGGTAGAGGAGATTATGGAAAAGAGAGGGAAGGGTGAGAATTTGGAGTATTTGGTTCGTTGGAAAGATGAAAGTGCTAACGAGTGGGTGAAAGCAAAGTATGTGGCGGAGGATTTGGTGAAGGATTATGAGGCTGGTCTTGAGTATGCGGTGGCGGAAGCGGTGGTTGGTCGGAGACTTGGGGATGATGGGAAGTATGAGTGTTTGGTTAAATGGGTTGATTTGGAAGAGCCCACTTGGGAGCCTGTGGAGAATGTTGATTCTGAGCTTGTTAAGATGTTTGAAGTGAATAATAATCAAGCCCAGCCCAGTGTTGATAATGGGCTTTCTACGCTCGCAAAGATTCAAATATAA 1242 0.5113 MEAIFVTKPISHLKPKHSLPPKNPFLSHHQSLPFRHKPTYFPTVTAAIQNQQQQETTPKNIEDESYGEVKKIIGSKALQDSTGMEYLIEWKDGHEPSWVPADFIAKDVLSEYETPWWNAARKANEAEIKKILEADDGRDVNAVDTDGRTALLFVAGLGSEPCVKLLAEAGANLDHQDNSGGLSALHMAAGYVRSGLGSEPCVKLLAEAGANLDHQDNSGGLSALHMAAGYVRPGVAKLLLDLDADPEISDDRGRTALELARELLKATPKGNPMQFGRRMGLEGVVKVLEGAVFEYSEVEEIMEKRGKGENLEYLVRWKDESANEWVKAKYVAEDLVKDYEAGLEYAVAEAVVGRRLGDDGKYECLVKWVDLEEPTWEPVENVDSELVKMFEVNNNQAQPSVDNGLSTLAKIQI* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4105 413 SUPERFAMILY Chromo domain-like 62 115 IPR016197 -
Psa7g4105 413 Gene3D - 63 110 - -
Psa7g4105 413 Gene3D - 292 341 - -
Psa7g4105 413 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 194 397 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Psa7g4105 413 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 1 194 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Psa7g4105 413 PANTHER HOMEOBOX PROTEIN WARIAI 1 194 - -
Psa7g4105 413 PANTHER HOMEOBOX PROTEIN WARIAI 194 397 - -
Psa7g4105 413 Gene3D - 194 291 IPR036770 -
Psa7g4105 413 Gene3D - 111 193 IPR036770 -
Psa7g4105 413 ProSiteProfiles Chromo and chromo shadow domain profile. 346 382 IPR000953 -
Psa7g4105 413 ProSiteProfiles Chromo and chromo shadow domain profile. 296 325 IPR000953 -
Psa7g4105 413 ProSiteProfiles Ankyrin repeat profile. 146 178 IPR002110 GO:0005515
Psa7g4105 413 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
Psa7g4105 413 ProSiteProfiles Ankyrin repeat profile. 180 217 IPR002110 GO:0005515
Psa7g4105 413 SUPERFAMILY Ankyrin repeat 112 262 IPR036770 -
Psa7g4105 413 CDD CD3_cpSRP43_like 343 392 - -
Psa7g4105 413 Gene3D - 342 393 - -
Psa7g4105 413 SUPERFAMILY Chromo domain-like 348 390 IPR016197 -
Psa7g4105 413 SMART chromo_7 294 344 IPR000953 -
Psa7g4105 413 SMART chromo_7 345 395 IPR000953 -
Psa7g4105 413 SMART chromo_7 65 117 IPR000953 -
Psa7g4105 413 ProSiteProfiles Ankyrin repeat region circular profile. 146 178 - -
Psa7g4105 413 Pfam Ankyrin repeats (many copies) 158 189 IPR002110 GO:0005515
Psa7g4105 413 Pfam Ankyrin repeats (many copies) 205 260 IPR002110 GO:0005515
Psa7g4105 413 SMART ANK_2a 180 214 IPR002110 GO:0005515
Psa7g4105 413 SMART ANK_2a 146 175 IPR002110 GO:0005515
Psa7g4105 413 SMART ANK_2a 219 248 IPR002110 GO:0005515
Psa7g4105 413 SMART ANK_2a 111 142 IPR002110 GO:0005515
Psa7g4105 413 SUPERFAMILY Chromo domain-like 294 341 IPR016197 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4105 119 271 Ion Channels AT4G32500 32.026 3.20e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4105 K12271 - gmx:100818382 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4105 7 336048492 336050090 Psa7g4105 7 336048492 336050090 ECH