Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4094 ATGGAGTGTACACCTGCTAGAAAGACGCAGAAAGCTGATCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACATCTTAGACCCTGATAGACCCAAAAATGATAAAGCAACCATTCTAGGGGATACAGTTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTAAAAGATGAATATACTATGCTAAATGAAGAATCTCGTGAGTTGTCTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAATTTGAATAACCAGTATCAGCTGCAACTCAGGACTATGAATCCATGGCCTGCAATGGATCATTCAGTAATGATGGTTCCACCGTCATATCCGTATCCAGTTCCAATGCCTGTACCTCCCGGTTCAATTCCAATGCAGCCGTACCCCTACTATGCTAACCAACATCCTACAATCATCCCTAACCCGTGTTCGACATATGTTCCGTTTTTAGCCCCCAACACAATTGTTGAACAGCAATCCACACAGTACGTATCCCCGCCTCTTCATCCAGGTAGCCGGTCCCACATATCAGGAAAACCAGAATCCAAAAACAAATCATCAAGGGAGAGCAGAGCTGAAAGAAATGCAGATTCTAATGATGTCGCCACAGACCTTGAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGGATTTATCATCCGCACAGAAAAAATCTAGAAAGTCTCCTTCGAGGAAGGAAAACAGTTACACAGAAGGTAGTTCTTTAGGCAAGTGTTCTTCATCTCACAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGTAGCAGAAAGGCTAGTGAATGA 852 0.4249 MECTPARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTVQLLKDLTSQVSKLKDEYTMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQLQLRTMNPWPAMDHSVMMVPPSYPYPVPMPVPPGSIPMQPYPYYANQHPTIIPNPCSTYVPFLAPNTIVEQQSTQYVSPPLHPGSRSHISGKPESKNKSSRESRAERNADSNDVATDLELKTPGSSADQDLSSAQKKSRKSPSRKENSYTEGSSLGKCSSSHSVQDSSSSSVVGSRKASE* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4094 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Psa7g4094 283 MobiDBLite consensus disorder prediction 192 217 - -
Psa7g4094 283 PANTHER TRANSCRIPTION FACTOR BHLH121 2 281 IPR044579 GO:0003700|GO:0055072
Psa7g4094 283 Coils Coil 53 108 - -
Psa7g4094 283 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Psa7g4094 283 MobiDBLite consensus disorder prediction 250 283 - -
Psa7g4094 283 PANTHER TRANSCRIPTION FACTOR BHLH121 2 281 - -
Psa7g4094 283 MobiDBLite consensus disorder prediction 177 283 - -
Psa7g4094 283 Gene3D - 6 89 IPR036638 GO:0046983
Psa7g4094 283 SMART finulus 12 62 IPR011598 GO:0046983
Psa7g4094 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Psa7g4094 283 CDD bHLH_AtILR3_like 11 85 - -
Psa7g4094 283 MobiDBLite consensus disorder prediction 221 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4094 Psa-Chr7 335382884 335386110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4094 6 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 64.754 2.58e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g4094 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4094 - - cam:101491902 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4094 7 335382884 335386110 Psa7g4094 7 335382884 335386110 ECH