Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4093 ATGAAGTCATTCAATCATAAAGAAAGATTTAATGAAAGAGAAGTTCATGTGAATAAAAAACGAAGTGGACATGGGATTCTGATTAGAAGTGAGGATGATACAAATGGGAAAGGGAAAGATGAAAAATATCGTGAGCATGCAATGCATATCTTGACCGAGAGAAAAAGGAGAAAGAAAATGAGTAATACGTTCTCGAACCTTCATGCTTTGCTTCCTCAACTACCTTCTAAGGTTGATAAATCAACAATTGTGAATGCAGCAGTGAAGGAAATAAAAACTCTACAACAAAGTCTTGAAAAGTTAGAAAAGAAGAAGCAAGAAAAGCTGAAATATGCAACCCTATTTGGAAGTGAGTCATCATCTGTAATCAACAAATCACATTGGCATCCTTATGAATCAAGGGAAACAATCAAAGTTGATCAGGGATCCTCGAGTTATAATAATAACTTGCCTACTAGTGCAATTGTAACTTCATATCCTAACTCAAAAGCATTATCATTATCTGCACCTCCACCACAACAAGTATCATTTCAATCATGGACTTCTCCAAATATTGTCATAAACATTTGTGGTGGTGAAGTACAATTTTGTATATGTGCTACTAAAAGGCCAGGTCTTTTGACAAAGATTGCTTTTGTGTTGGAAAAATATATGATTGATATTGTATCTGCGAATATTATGTGCAATGGAAATGGAAGTTTCTACATGATTCAAGCCCATGTGAGACAAGGTTCACATGACACAAGTTTAGTGGAGAAAATTTACAAGCAAGCAGCTAGAGAAATTATGATGCAGATCTCTTAA 804 0.347 MKSFNHKERFNEREVHVNKKRSGHGILIRSEDDTNGKGKDEKYREHAMHILTERKRRKKMSNTFSNLHALLPQLPSKVDKSTIVNAAVKEIKTLQQSLEKLEKKKQEKLKYATLFGSESSSVINKSHWHPYESRETIKVDQGSSSYNNNLPTSAIVTSYPNSKALSLSAPPPQQVSFQSWTSPNIVINICGGEVQFCICATKRPGLLTKIAFVLEKYMIDIVSANIMCNGNGSFYMIQAHVRQGSHDTSLVEKIYKQAAREIMMQIS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4093 267 Pfam Helix-loop-helix DNA-binding domain 47 95 IPR011598 GO:0046983
Psa7g4093 267 PANTHER TRANSCRIPTION FACTOR BHLH95 11 265 - -
Psa7g4093 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 106 IPR036638 GO:0046983
Psa7g4093 267 Coils Coil 84 111 - -
Psa7g4093 267 CDD bHLH_AtbHLH_like 49 96 IPR045239 -
Psa7g4093 267 SMART finulus 50 100 IPR011598 GO:0046983
Psa7g4093 267 Gene3D - 35 115 IPR036638 GO:0046983
Psa7g4093 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Psa7g4093 267 CDD ACT 203 254 - -
Psa7g4093 267 PANTHER - 11 265 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4093 Psa-Chr7 335263645 335265181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4093 35 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.111 6.32e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g4093 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4093 - - mtr:MTR_4g085700 310.457