Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4040 ATGACAGTTGAAAAGAGGTTTGTTTTGGTTGGGATTAGAATGGATAGTCAAAGCAGACAGCTTCTCAATTGGGCTCTTGTTAAAGTTGCTGAACCTGGTGATTATGTTGTTGCTGTTCATGTAGTTAAAACCAAAAGTTCAGATAATGTTTTGAAAAACAAGAGCACCATAGATGGCTATTTAGAGGTTTATGAAGGCCTGTGTGATGTGAAGAAGGTTGGTCTTTCTGCGAAAATCTTAACAGGAAGATCAATTCGAAACATTCTTGTTAGAGAAGCAAAGAATCATGGTGCTTTGGCTCTAGTGGTAGGGGGTAAGTCTGCCACGGCTAAATATTGCGCTAAACGACTTCCACCAACCACCAATGTTCTAGCCATCCAAGATTCAAGGATTGTCTTTGGGAGGTGCAGCGATAAACTACCACCAGGTGGTTTTATATTGGATCCAAGACCAAGCATAGATAACCCGAGTGACAGAATAGTCCAATCTGAATTTGGCTGCGCCATGGTGGAGAGTGAGAAATCACTACACCAAAATACCAAGGAATCGAAAGAAGAAACATTTGGCTATCCAGAAAAGCACAAGTCACGGTCGATATCTATGTTTGCAGGTGAACCTTCTAAGCAGAAGCTTGGATGGCCTCTACTCTGCAGAACGAATTCAGAAATCTCACAAAGCTGTCATGGAAGGGACATGTCAGTAGTACAATGGGTAATGACTCTGCCAGACCGTTCATCGGAAAATAGTCCTCAGTCATCTTCCAGCGGCGAAAATCCATTCGAAAGGAGCACCAGCGACATTCTTGAGGACGAGAGCTTCAAAAATTATTTATCTCCATCTGTTGTACTGCCGAAAGGCCTAGAGGAGATATTAAATGTAAATTCACTCGATTGCAAGTGGTTCACCCTCGAGGCTCTGAAGTCTTGCACTAACCAATTCTCTTCAGAAAATTTGATTGGGAAAGGTGGGAGCAACCGTGTGTACAAAGGAATTCTATCTGATGGAGAGCCAATTGCGGTTAAAGTACTGCGGTCATCAAAAGAAGCCTGGAAAGATTTTTCCTTTGAGATGGAAATAATATCCCCATTGAAGCATAAAAACATTGCTCAACTACTTGGAGTTTGCATAGAAGACAATAACACGTTAATATCCGTTTATGATTATTTCCCCAAAGGCAGCTTAGAGGAAAATCTACATGGAAATAACAAAGATGGATCCATTTTGTCATGGGAAGTGAGATTCAATGTAGCTGTTGGAGTAGCTGAGGCCCTTGATTACCTACACACAGAAGCCTTGAAGCCTGTTATACATAGAGATGTCAAATCTTCAAACATTCTTCTTTCCCAAGACTTTGAACCACAATTGTCTGATTTTGGACTTGCAATATGGGGACCAACAAAAACACCCTTTTTGACACAAGAAATTGTAGTAGGAACATTTGGTTACCTTGCTCCTGAATACTTCATGTATGGAAAAGTCAGTGATAAGATAGATGTTTATGCTTTTGGCGTGGTACTACTTGAACTAATATCAGGTAGGGAACCAATCAGTTCTGAACCTTGCAAAGGACAGGAGAGCTTGGTAGTCTGGGCAAAACCATTAATGGAGAGAGGGGATGTTAAAGGTTTGTTGGACCCAAAATTAGAAGAGAAGTGTGACGAGACACAGTTGCAAAGAATGGTTTTAGCAGCATCTTTATGCATCACACAAGCTGCTAGACTTCGTCCTAAATTTAACCAGATATTGAAGATCCTAAAAGGTGGTGATGAAGTTGAATATTGCTTCAATGAGCATTCAGAAAATGATGAAAACATCGACGACGAGGTGTATCCAAATTCAAGTGCAGAGTTACACCTAACACTTGCATTACTCGGTGTTGATGAAGACAATACATCATCATGTAGTAGTACAGAGCACAGCTATAGTGAGAATTTGAAAGACCAATGGAGCAGATCTTCAAGTTTTAATTAG 1971 0.4064 MTVEKRFVLVGIRMDSQSRQLLNWALVKVAEPGDYVVAVHVVKTKSSDNVLKNKSTIDGYLEVYEGLCDVKKVGLSAKILTGRSIRNILVREAKNHGALALVVGGKSATAKYCAKRLPPTTNVLAIQDSRIVFGRCSDKLPPGGFILDPRPSIDNPSDRIVQSEFGCAMVESEKSLHQNTKESKEETFGYPEKHKSRSISMFAGEPSKQKLGWPLLCRTNSEISQSCHGRDMSVVQWVMTLPDRSSENSPQSSSSGENPFERSTSDILEDESFKNYLSPSVVLPKGLEEILNVNSLDCKWFTLEALKSCTNQFSSENLIGKGGSNRVYKGILSDGEPIAVKVLRSSKEAWKDFSFEMEIISPLKHKNIAQLLGVCIEDNNTLISVYDYFPKGSLEENLHGNNKDGSILSWEVRFNVAVGVAEALDYLHTEALKPVIHRDVKSSNILLSQDFEPQLSDFGLAIWGPTKTPFLTQEIVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSEPCKGQESLVVWAKPLMERGDVKGLLDPKLEEKCDETQLQRMVLAASLCITQAARLRPKFNQILKILKGGDEVEYCFNEHSENDENIDDEVYPNSSAELHLTLALLGVDEDNTSSCSSTEHSYSENLKDQWSRSSSFN* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4040 656 MobiDBLite consensus disorder prediction 173 192 - -
Psa7g4040 656 Gene3D Transferase(Phosphotransferase) domain 1 389 600 - -
Psa7g4040 656 Pfam Protein kinase domain 314 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g4040 656 CDD USP_Like 8 118 - -
Psa7g4040 656 Gene3D Phosphorylase Kinase; domain 1 285 388 - -
Psa7g4040 656 PANTHER OS08G0249100 PROTEIN 3 636 - -
Psa7g4040 656 MobiDBLite consensus disorder prediction 243 263 - -
Psa7g4040 656 ProSiteProfiles Protein kinase domain profile. 313 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g4040 656 SMART serkin_6 313 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g4040 656 MobiDBLite consensus disorder prediction 243 262 - -
Psa7g4040 656 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 3 636 - -
Psa7g4040 656 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 107 - -
Psa7g4040 656 MobiDBLite consensus disorder prediction 175 192 - -
Psa7g4040 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Psa7g4040 656 SUPERFAMILY Protein kinase-like (PK-like) 295 585 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4040 Psa-Chr7 332604769 332608936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4040 301 655 Trihelix Transcription Factor Family AT1G70460 39.227 1.72e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa7g4040 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4040 - - gmx:100789189 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4040 7 332604769 332608936 Psa7g4040 7 332604769 332608936 ECH
Psa7g4040 7 332604769 332608936 Psa5g1417 5 109609171 109612386 ECH