Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4031 ATGCAGATCTTCGTCAAGACTTTAACCGGAAAAACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGCACTCTTGCTGATTACAACATTCAAAAGGAATCGACGCTTCACTTGGTCCTGAGGCTCAGGGGAGGTACCATGATTAAAGTGAAAACTTTAACTGGTAAAGAAATTGAAATTGACATTGAGCCAACTGATACAATTGACCGTATCAAGGAACGTGTAGAAGAAAAGGAGGGAATTCCACCTGTGCAGCAGAGGTTCTCTCTCTCTCATTTTATTTTGGCTTAA 384 0.4479 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRFSLSHFILA* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4031 127 Gene3D - 1 76 - -
Psa7g4031 127 PANTHER - 1 119 - -
Psa7g4031 127 SUPERFAMILY Ubiquitin-like 79 126 IPR029071 -
Psa7g4031 127 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Psa7g4031 127 Pfam Ubiquitin family 79 121 IPR000626 GO:0005515
Psa7g4031 127 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Psa7g4031 127 PANTHER UBIQUITIN 1 119 - -
Psa7g4031 127 PRINTS Ubiquitin signature 11 31 IPR019956 -
Psa7g4031 127 PRINTS Ubiquitin signature 32 52 IPR019956 -
Psa7g4031 127 PRINTS Ubiquitin signature 53 74 IPR019956 -
Psa7g4031 127 CDD Ubl_ubiquitin 1 76 - -
Psa7g4031 127 Gene3D - 77 125 - -
Psa7g4031 127 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Psa7g4031 127 ProSiteProfiles Ubiquitin domain profile. 77 127 IPR000626 GO:0005515
Psa7g4031 127 SMART ubq_7 1 72 IPR000626 GO:0005515
Psa7g4031 127 SMART ubq_7 77 127 IPR000626 GO:0005515
Psa7g4031 127 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4031 Psa-Chr7 332220643 332222939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4031 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 7.21e-51 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4031 K12158 - gra:105785045 224.172