Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4002 ATGGTGGTGATCATGCAAGAGCAACATCAACCACATCAGCAGCGGCAGAATCCTTCTGTACTGTTGCCGCAACTCACCACCACCTCCCTTAGGTCACCATCCTCCACCTCCGCCGCATCCCAATCCCATCTTTCTTCGCCTATCCATATCGCTTCCCACCGCCAACCCCTGCTCCCGCCACTTCCGGCGCCGGTCGCGGCTGTTCTCCCGTCCGGAGAAACGGTTTCGACGGCGCCGCCGAATTTGCAGTTGGCAAGGGTCCGTCTGTCGGACATTGCTCCATATGATGGTGCACCGGCGGGGCCTTATGTTAGGGCGATGGAAACACTGTGTTCGTCTCTGTTGAAGCACAATGCGGCGTTGATTGAATTAGGGAGTGAAGATACTGCTCTGATGCGATGTGGATTGGAAGGTGCTAGATTGTTCTTCAGGAGTAGAGCACATCTCGGTGTTGGAAAGGGAAGTCGCGGGGTTTATATGTATAGAGCAGGAAGGGCTTTGGAGGATTGGGATTCATCTCCTCCTTGCATGGCTGATATTTTTAGGTGCATGGGAAAGGCTTCTCGTGTTGCTTTGTCAGCCATTGCAAGACATCTGCGATTGAGAAGCGATGTTTTTAACCAACTGCTTGATGATGCTCCATTACCTGCTAACGAGGTGTCTTCTTCTGTTCTTGTTGGGACCTACTCACACGCTTCTTTGCAAAATGGAAAAGGTGCCATTGGAGGTGGTAAGCCCAGCGTCAATGGTGAAGACGAGAAGGGATTATTGACCTTGATATCTTCTGACACTCCTGGTTTTCAGGTATGTGATCCCAATGGCCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCAGGAGATCTTCTACTAATAACAGGTCGGGCGCTTAGCCATGCTACTGCAGGTCTACATCCAGCTGCATCATATAGAGCTTCTCCAGATTGTTCTCTGAGTCCGAATAGTGGAGGAAGGACTTCACTTGCATATAGACTCATGCCACAGGGCAATGCTATACTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTCCTCAAAGCTATGTTCCAATATCTGTAAGCCAGTTTATGGACGACCTTGCTGCTGAAGAACTGATAGGCAGTCAATGTGCTAATGATGATGTTTCCCAAAGCAATGTGAACAAGGACCCATCATTAAGAAGTGTTCTATCAGATCCTTTATCTGGCTCATTCTTGGAAGATGCAATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCACACTGAGAAGAGTCATTGAAACATCAAGATGCACCCTCTGCAATGTTGATATTGAGACTGGTTCTTTGATCCCTAATCTCGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGATCGAAGGTTATTTCGAAATGCGGCTCTTCGAAAGCGGCGGAAAGAAATGGGTGAACCAATGGATCCAATCAGAAGAGTGAACAGGGAAAATGGAGATTTTACTTCTACTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATTAAGGGTAACAGGAGAACACCTGAAAAATTTGTTGGGAAAGAAGCTGTAATTACGTCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGATCTGGAGAGAATGTCCGCCTGCAGTATCGTTCTCTCAGGAAGCTCTTGAACTCACCAACTATGGAGGATCAGAGTCAGTTGCAGCTAGTTCAAAATAACAGCTCTTAA 1755 0.4752 MVVIMQEQHQPHQQRQNPSVLLPQLTTTSLRSPSSTSAASQSHLSSPIHIASHRQPLLPPLPAPVAAVLPSGETVSTAPPNLQLARVRLSDIAPYDGAPAGPYVRAMETLCSSLLKHNAALIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRVALSAIARHLRLRSDVFNQLLDDAPLPANEVSSSVLVGTYSHASLQNGKGAIGGGKPSVNGEDEKGLLTLISSDTPGFQVCDPNGRWYLADSGSGPGDLLLITGRALSHATAGLHPAASYRASPDCSLSPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLAAEELIGSQCANDDVSQSNVNKDPSLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIETGSLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGEPMDPIRRVNRENGDFTSTDGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKLLNSPTMEDQSQLQLVQNNSS* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4002 584 MobiDBLite consensus disorder prediction 1 20 - -
Psa7g4002 584 SUPERFAMILY Clavaminate synthase-like 174 364 - -
Psa7g4002 584 Gene3D - 157 372 IPR027443 -
Psa7g4002 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 461 IPR013083 -
Psa7g4002 584 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 79 582 - -
Psa7g4002 584 SUPERFAMILY RING/U-box 393 459 - -
Psa7g4002 584 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 79 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4002 Psa-Chr7 330673778 330683043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4002 393 571 Plant U-box Gene Family AT5G05230 41.436 2.57e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4002 - - gmx:100807199 890.182