Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4000 ATGAGCTCTCGAACAGGCAGGCCGACTGCTGTCAGAAGTTACCGGCGAAGGAAGGCAGTTTTGGACCTTGACCTTAACCGGGTACCGGCTGGTGATAATCGCGAGCAGGAGGGACCTTCCATTCAGTTGGAGCCTCAAGTAGTAGAAACTCAAGTCAACAACCAGCAACAACAAGCCAACAACCAGCAACAACCCCCTTTGATTGATGTGGAGGCCATTGATGATGATGTTATTGAATCTTCCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCTAGAAGAAATTGCGGGAGGACTATAGTTGATGTGGATTTAGAAGAGCAGACTAGGGTAAACAACAATATTCGCTACAAGCGCAGAAGAGAACCTCCAAATCGAACCATTATCAATTGTGATCTTTATATTAATTTGGAAGGCAGTAGTAGTGCTCCGGTGGAAAATGTCAAAAAGCTACCTGAGCCTCCAAAGGAACCCGTCTTCAATTGTCCTATATGCATGGGCCCTTTGGTTGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGGCATGTATCAAGTCTGCAATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAGATCACCGTGAAAGAGCTTATAAGGGTCTTTCTCCCATCAACTGGTTAA 654 0.4465 MSSRTGRPTAVRSYRRRKAVLDLDLNRVPAGDNREQEGPSIQLEPQVVETQVNNQQQQANNQQQPPLIDVEAIDDDVIESSPRAFAEAKNNSRRNCGRTIVDVDLEEQTRVNNNIRYKRRREPPNRTIINCDLYINLEGSSSAPVENVKKLPEPPKEPVFNCPICMGPLVEEMSTRCGHIFCKACIKSAISAQAKCPTCRKKITVKELIRVFLPSTG* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4000 217 PANTHER ELFLESS, ISOFORM B 3 216 - -
Psa7g4000 217 SMART ring_2 162 199 IPR001841 -
Psa7g4000 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 215 IPR013083 -
Psa7g4000 217 Pfam Zinc finger, C3HC4 type (RING finger) 161 199 - -
Psa7g4000 217 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Psa7g4000 217 PANTHER RING ZINC FINGER-RELATED 3 216 - -
Psa7g4000 217 SUPERFAMILY RING/U-box 161 206 - -
Psa7g4000 217 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4000 Psa-Chr7 330557920 330562065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4000 12 216 C3H Transcription Factor Family AT5G48655 52.174 3.52e-53 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4000 K22651 - gmx:100306616 283.878