Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3996 ATGGCGTCTTCTTTCGTCAAGCTTGACGATTCTCCAATGTTCCAGAAACAGTTAAATTTTATGGAAGACACAGCAGACGAGTTAAAGGATCGGTGTCAGAATCTATTCAAAGGGTGTAAGAAGTTTATGACAGTTTTGGGGGAAGCACATAATGGAGAAAATGCCTTTGCTGATTCATTAGAAGCATTTGGAGGTGGCTACGACGACCCTGTTAGTGTATCAGTTGGAGGACCCGTCATATCTAAGTTTATCACTGCACTACGTGAATTAGCTACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTATTGATTGACCGGTTGTCAGAGTTTATAAATGTTGATATGCAAAATGCAAAGGAATCTCGTCGTCGTTTTGACAAATCTGTGCAATCGTATGATCAGTCACGAGAAAAGTTTGTTTCTTTGAAGAAGAATACTCCTGAAGATGTTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCAAAGTCATCATTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCAATAAGTGCAATAATGGATGCTCATCTGAGATACTTTAAACTGGGTTATGACTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACGTATGCTCAACAATCTAAAGAAGTGGCTAACATTGAGCAAGATAAGCTTGCAAAACGTATCCAGGAATACAGGACGCAAACAGAGGTTGAAAATATACCCATGCCAGGTGCTGATGGCACCCATCCTGTAGGTTTGAATTCTTACAAAAGCTCTGAAGCAGGGATGCAGTTTGCAACCAAAGGCGAGATTCAAACAGTTAAACAAGGCTATCTGTTAAAACGATCATCAAGGATGCGAGGAGATTGGAAAAGGAGGTTTTTTGTACTTAATAACCATGGGAGTTTATATTACTACAGATCAAAAGGACCCAAACCCGTGGGATTTCAGTCATATAATTATAGTCGTCCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAAGCATAGTAGGGCAGTGTCACTAAATGAGGATATTTTGGGTTGTTGTACGGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGTATTATTTCTCCCTCAAAATCATATACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAATAAAGTTACTGCAGCTATCACCTCGCTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGGTAAATTGCAATTGCAAAATAAGAACTCGGCAACTGGTTCTTCTTTGACAAGTCAACAAGAGGATAGTAATAAATCTTTGATGGATGATGTATATTCCAAAGAAGTAGGCAGTGTCTCTAAAATTTTAAGAGGAATTTCTGGGAATGACAAGTGTGCTGAGTGCAGTACTCCTGAGCCAGACTGGGCATCTCTAAACCTTGGTATACTGCTGTGTATTGAATGCTCCGGAGTGCATCGCAATCTTGGTGTTCATATCTCAAAGGTGAGATCTATAACGTTAGATGTGAAGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAACTTGGGTAATACTTTTTGTAATTCTATTTGGGAGGGCTTGCTTCTGCTTGGTGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCATGTTCCACAGACCCCTCTCAATATAAAGAAAAGTACATCCAAGCAAAGTATGCAGAGAAATCACTAGTCATACGGGAAGAGGACATACCCGAAAATCCTTCAGTTTCCACAAAAATCTGGCAAGCAGTTCAGTCTTTAAATGTAAAAGAAGTGTATCGCCTTATTGTAACATCAACTTCAAATCCGATAAACACAAAATTTGAAGAAGCGGTTTCCCATGCCGAGACTGAAAATCATCAGCATGATGCTGAAGCCTGTCTGAGGATAAAAGAGGCTAATGAAACAGATAGTTGTTTCCGCGGTTGGTCTTTATTACACCTAGCATGTCATTCTGGCAGTCTGAGGATAAAAGAGGCTAATGAAACAGATAGTTGTTTCCGCGGTTGGTCTTTATTACACCTAGCATGTCATTCTGGCAGTACATTAATGGTTGAGCTGTTGCTCCAATTTGGTGCTGATATAAACATGCACGATTATCATGGAAGGACTCCCTTGCACCGTTGCATTTCTAGTGGGAAAAATTCATTGGCTAAGTTTTTACTAAGAAGGGGCGCAAAACCATCAATTAAAGATGCTGGTGGACATACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCTTGCTTGTTGAATGCCAGTAA 2382 0.3984 MASSFVKLDDSPMFQKQLNFMEDTADELKDRCQNLFKGCKKFMTVLGEAHNGENAFADSLEAFGGGYDDPVSVSVGGPVISKFITALRELATFKELLRSQVEHVLIDRLSEFINVDMQNAKESRRRFDKSVQSYDQSREKFVSLKKNTPEDVVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEVANIEQDKLAKRIQEYRTQTEVENIPMPGADGTHPVGLNSYKSSEAGMQFATKGEIQTVKQGYLLKRSSRMRGDWKRRFFVLNNHGSLYYYRSKGPKPVGFQSYNYSRPSEQNSGMFGRFRSKHSRAVSLNEDILGCCTVDLCTSTIKMDAEDTDLRLCFRIISPSKSYTLQAENEADRMDWVNKVTAAITSLFNFQFLQQPHYGKLQLQNKNSATGSSLTSQQEDSNKSLMDDVYSKEVGSVSKILRGISGNDKCAECSTPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFNNLGNTFCNSIWEGLLLLGDERVGESNVPLKPCSTDPSQYKEKYIQAKYAEKSLVIREEDIPENPSVSTKIWQAVQSLNVKEVYRLIVTSTSNPINTKFEEAVSHAETENHQHDAEACLRIKEANETDSCFRGWSLLHLACHSGSLRIKEANETDSCFRGWSLLHLACHSGSTLMVELLLQFGADINMHDYHGRTPLHRCISSGKNSLAKFLLRRGAKPSIKDAGGHTALERAMEMGAITDEELFILLVECQ* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3996 793 SMART arf_gap_3 471 603 IPR001164 GO:0005096
Psa7g3996 793 Pfam Ankyrin repeats (3 copies) 678 764 IPR002110 GO:0005515
Psa7g3996 793 ProSiteProfiles Ankyrin repeat region circular profile. 700 731 - -
Psa7g3996 793 Gene3D - 282 431 IPR011993 -
Psa7g3996 793 Pfam BAR domain of APPL family 8 230 - -
Psa7g3996 793 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Psa7g3996 793 PRINTS HIV Rev interacting protein signature 483 502 IPR001164 GO:0005096
Psa7g3996 793 PRINTS HIV Rev interacting protein signature 502 519 IPR001164 GO:0005096
Psa7g3996 793 PRINTS HIV Rev interacting protein signature 525 546 IPR001164 GO:0005096
Psa7g3996 793 SUPERFAMILY Ankyrin repeat 667 780 IPR036770 -
Psa7g3996 793 SUPERFAMILY PH domain-like 287 436 - -
Psa7g3996 793 Pfam PH domain 289 420 IPR001849 -
Psa7g3996 793 ProSiteProfiles PH domain profile. 287 421 IPR001849 -
Psa7g3996 793 PANTHER CENTAURIN/ARF 3 686 IPR045258 GO:0005096
Psa7g3996 793 PANTHER CENTAURIN/ARF 688 789 IPR045258 GO:0005096
Psa7g3996 793 CDD PH_ACAP 290 425 - -
Psa7g3996 793 Gene3D - 637 793 IPR036770 -
Psa7g3996 793 SUPERFAMILY ArfGap/RecO-like zinc finger 474 596 IPR037278 -
Psa7g3996 793 CDD BAR_SFC_plant 16 217 IPR035670 -
Psa7g3996 793 Gene3D Arf GTPase activating protein 451 603 IPR038508 -
Psa7g3996 793 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Psa7g3996 793 ProSiteProfiles Ankyrin repeat region circular profile. 733 764 - -
Psa7g3996 793 ProSiteProfiles Ankyrin repeat profile. 733 765 IPR002110 GO:0005515
Psa7g3996 793 SUPERFAMILY BAR/IMD domain-like 8 310 IPR027267 -
Psa7g3996 793 Pfam Putative GTPase activating protein for Arf 475 596 IPR001164 GO:0005096
Psa7g3996 793 ProSiteProfiles ARF GTPase-activating proteins domain profile. 471 603 IPR001164 GO:0005096
Psa7g3996 793 SMART ANK_2a 733 762 IPR002110 GO:0005515
Psa7g3996 793 SMART ANK_2a 700 729 IPR002110 GO:0005515
Psa7g3996 793 Coils Coil 229 249 - -
Psa7g3996 793 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 688 789 - -
Psa7g3996 793 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 686 - -
Psa7g3996 793 CDD ArfGap 475 590 - -
Psa7g3996 793 ProSiteProfiles Ankyrin repeat profile. 700 732 IPR002110 GO:0005515
Psa7g3996 793 SMART PH_update 288 423 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3996 Psa-Chr7 330150571 330169158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3996 482 592 C2H2 Transcription Factor Family AT3G07940 41.964 1.15e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3996 K12489 - gmx:100796740 1253.43