Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3995 ATGACGCTATCCACGGCGATATCTCCATCCTTAACCGACTCCAAGAAGAAGAAGAACCGCAACAAAAATGGAGCAGAAGAAGATGAATCAACGGAGCAACAAAACCAGCAAGACTTCATGATCAAACCAGGCTCAAGAGCGTCGTCAATCGACACTTCAGAGTGGCCGATACTCCTCAAGAACTACGACCGCCTCAACATCCGAACCGGTCACTATACTCCTCTTCCCGCCGGACACTCTCCGCTGAAACGGCCACTCAACGATTATCTCAAATACGGTGTCCTCAACCTTGATAAGCCAGCTAATCCTTCTTCTCACGAAGTTGTTGCTTGGATCAAGAGGATTCTCCGTGTCGAAAAAACCGGTCACAGTGGTACTCTCGATCCCAAAGTTACTGGGAATTTGATCGTTTGCATTGACAGAGCAACAAGGCTTGTTAAATCTCAACAAGGTGCTGGGAAAGAGTATGTTTGTATTGCAAGACTTCATTCAGCTGTTCCTGATGTTGCTAAGGTAGCTCGTGCTCTTGAAACCCTAACTGGTGCTGTTTTTCAGAGACCACCTTTGATTTCTGCTGTTAAGCGTCAACTTAGGATTAGAACTGTTTATGAAAGTAAGATGCTTGAATATGATGCCGAGAGACATTTAGTCGTGTTTTGGATTTCATGTGAAGCTGGTACTTACGTTAGGACTATGTGTGTTCATTTGGGTTTATTGCTTGGTGTTGGTAGTCATATGCAAGAACTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAAGACAATATGGTTTCTATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATAATCGTGACGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAAGTTCTTTTGACTAGTTATAAGAGATTAGTTGTTAAGGATTCGGCTGTTAATGCTATTTGTTATGGGGCTAAGTTGATGATTCCGGGTTTGCTTAGGTTTGAGAATGATATTGATGCTGGCGAGGAGGTTGTGCTTATGACGACCAAGGGTGAAGCTATTGCCCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCTAGTTGTGATCATGGCATTGTTGCTAAGATCAAGAGGGTGGTTATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTACGAAGAAGAAGCTGATTGCTCTAGGGAAGCTTGATAAGCATGGGAAGCCAAATGAGCATACTCCTGAAGAGTGGTCGAGGAATGTGGTGGCATTGCCTGCTGGTTGGGACAGCACGATTGCTGCAAAGGCTGCTGCTGCTACTGAAACTGAAGATGGGAAGAAAGCGGTTGCTGAAGATGGGGAAGGGCGTAAGAGAAAGAAACATGAAACTGACGACAGTCCTGCTCCTGCTAAGAAGTCCAAAGTTGCTGAAGTTGAAGATGAAGAGAAAGTGAAGACCATAAAAGTAGATGAAGCTGCTGCGGATGTTGAAGACGAGAAGAAAGAAAAGAAGAAAAAGAAAAAGAAGAAGGATAAAGAGAATGGAGATGCTGCATCTTCCGATGATGAGAAAGTTGTAAAGGAAAAGAAAAAGAAGAACAAGGAAAAGGGTGAAGATGGTTCTCCTGAAGTGGACAAGTCCGAGAAGAAGAAAAAGAAGCAAAAGGAAAAATGCATTTTTCATATTGTGTCAAAAACAGAGGGCTGGTTGCTGCCTGGAAATACTTCAGCTGTCTTCTCACTTCCTCTGGCTGGTGCTCTTTTGAACTATTTGCAGGCAAGGCATTGTCTCAATTTTGATAGGATGGATGAATTTAGTTTGTGA 1818 0.4356 MTLSTAISPSLTDSKKKKNRNKNGAEEDESTEQQNQQDFMIKPGSRASSIDTSEWPILLKNYDRLNIRTGHYTPLPAGHSPLKRPLNDYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTVYESKMLEYDAERHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNNRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDAGEEVVLMTTKGEAIALGIAEMTTAVMASCDHGIVAKIKRVVMDRDTYPRKWGLGPRASTKKKLIALGKLDKHGKPNEHTPEEWSRNVVALPAGWDSTIAAKAAAATETEDGKKAVAEDGEGRKRKKHETDDSPAPAKKSKVAEVEDEEKVKTIKVDEAAADVEDEKKEKKKKKKKKDKENGDAASSDDEKVVKEKKKKNKEKGEDGSPEVDKSEKKKKKQKEKCIFHIVSKTEGWLLPGNTSAVFSLPLAGALLNYLQARHCLNFDRMDEFSL* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3995 605 MobiDBLite consensus disorder prediction 438 550 - -
Psa7g3995 605 Gene3D Pseudouridine synthase 85 291 - -
Psa7g3995 605 Coils Coil 487 514 - -
Psa7g3995 605 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 15 547 IPR004802 GO:0006396
Psa7g3995 605 Gene3D PUA domain 52 383 IPR036974 GO:0003723
Psa7g3995 605 MobiDBLite consensus disorder prediction 1 47 - -
Psa7g3995 605 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT DKC1 15 547 - -
Psa7g3995 605 ProSiteProfiles PUA domain profile. 299 374 - -
Psa7g3995 605 Pfam TruB family pseudouridylate synthase (N terminal domain) 113 229 IPR002501 GO:0006396
Psa7g3995 605 Pfam PUA domain 300 372 IPR002478 GO:0003723
Psa7g3995 605 CDD PseudoU_synth_hDyskerin 91 273 - -
Psa7g3995 605 SMART DKCLD_2 51 109 IPR012960 -
Psa7g3995 605 MobiDBLite consensus disorder prediction 433 553 - -
Psa7g3995 605 SUPERFAMILY PUA domain-like 299 380 IPR015947 -
Psa7g3995 605 TIGRFAM unchar_dom_2: uncharacterized domain 2 295 371 IPR004521 GO:0003723
Psa7g3995 605 Pfam tRNA pseudouridylate synthase B C-terminal domain 230 296 IPR032819 -
Psa7g3995 605 Pfam DKCLD (NUC011) domain 52 109 IPR012960 -
Psa7g3995 605 SUPERFAMILY Pseudouridine synthase 52 297 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Psa7g3995 605 TIGRFAM CBF5: putative rRNA pseudouridine synthase 59 384 IPR004802 GO:0006396
Psa7g3995 605 MobiDBLite consensus disorder prediction 13 29 - -
Psa7g3995 605 SMART pua_5 300 374 IPR002478 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3995 Psa-Chr7 330104036 330106345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3995 15 472 NAC Transcription Factor Family AT3G57150 80.778 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3995 K11131 - gmx:100806355 777.319