Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3979 ATGGGCAAGTCAAGCAAGAAATCCGCCACCAAGGTTGATGCTGCTCCCGTTGTCGTTTCGCCAGTCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAGGAAATCAAGAAAGTGAGTGCTAAGAAACAAAAGGTAGAGGAGGTTATTGCTAAGCAGAAGAAGGAAGCTGTGGTTCAGAAAGTTAAGGATGAAAGTAGTTCAGAGGAAGATTCCTCTGAATCTGAGGATGAGAAACCCGTTGTCAAACCTGCTGCTCCTGTCAAAAAGACACCAGCTAAGAACGGGAATGCTAAGAAAGCCAAGCCCGATTCTAGTTCTTCAGATTCTGAGTCTGATGAGGATGAGTCTTCGGACGAGGATGATGTGAGTGCTAAGAAGCCAGCGAAGGTTGCGGTTGCTGCCAAGCCTAAGCAGGCACCAAAGAAGGAGGAAAGTTCTGATGAATCAGATGATGAATCTGATGAAGATTCATCTGAAGATGAGAAACCTGCTCCAAAAGCTGCACCAAAAGCTAAGGTTGTTCCTGCTGCTGTGAAGCCTGCTGCTGCAAAGAAGAAAGCTGAAAGCTCCGACTCTGATAGCTCAGAGGATTCTGATGATGAGGAGGATACCAAGCCTACTGTAACTGCGGTGTCAAAGTCTGCTGCTGTTGCCAAAAAGACAGAGGATGATGATGAAGATAGCAGTGATGAAGAGGATAGCAGCTCTGATGAAGATAATAAAACTTCCAAGCCTTCTAATGGAAACAAGAAGCCAGTGACTGTCTCTAAGAAAGAGGATAAGATGAATGTTGACAAGGATAGCAGTGACAGTGATGAGGAAAGTGATAGTGATGAGGAGAGTGAGAGTGAGGATGAACCATCCAAAACTCCTCAAAAAAAGACTAAGGATGTGGAGATGATTGATGCTGACAAATCTTCAAAGAAAGCTCCTGCTACCCCAGCTACACCAAGTGAGAATGGAGGTTCAAAGACTTTATTTGTTGGGAACCTGTCATTCAGTGTCCAGCGATCTGACATTGAAAGTTTCTTTCAAGAATGCGGAGAGGTTGTTGATGTCCGTCTTGCCTCAGATGAGGATGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCGACTGCAGAGGCAGCACAAAGTGCACTTGAGTTGAATGGGCAAGAATTGTTGCAAAGAGGTGTTCGGCTTGATTTAGCTCGGGAAAGGGGAGCTTTCACTCCAAATAGTACTGGCAACCAGAACAGTGGTAGAGGCCAGTCCCAAACTGTATTTGTCAGGGGTTTTGATAAATCTCTTGGAGAGGATGAGATTAGAGCAAAGTTGGAACAACATTTTGCTTCTTGCGGGCAGGCTTCAAGGGTGTCAATCCCCAAGGATTATGATACTGGCTATTCAAAGGGGTTTGCATACATGGACTTCAAAGATTCAGACAGCTTTAACAAAGCCATAGAGCTCCATGGAAGTGAACTTGATGGTTATCCTTTGTCAATTGATGAAGCTAAGCCTAGAGAAAGTACAGGTTTTGGTGGTAGAGGAACTCCAAGGGGTGGTGGCTCTAGAGGTCGTGGTGGTCGATTTGGTGACAGGAATAGTGGAGGTCGATTTGGTGACAGGAGCGGTGGAGGAAGAAGTGGTGGAAGGGATGGTGGTAGAGGTGGTAGAAGGGGTGGTGGTCGTTTTGGATTCAATAAACCAAGCCTTGCTCCAGAAGGCACAGGAAAAAAGACCACTTTTGCAGACGACTAG 1746 0.4588 MGKSSKKSATKVDAAPVVVSPVKSGKKGKRQAEEEIKKVSAKKQKVEEVIAKQKKEAVVQKVKDESSSEEDSSESEDEKPVVKPAAPVKKTPAKNGNAKKAKPDSSSSDSESDEDESSDEDDVSAKKPAKVAVAAKPKQAPKKEESSDESDDESDEDSSEDEKPAPKAAPKAKVVPAAVKPAAAKKKAESSDSDSSEDSDDEEDTKPTVTAVSKSAAVAKKTEDDDEDSSDEEDSSSDEDNKTSKPSNGNKKPVTVSKKEDKMNVDKDSSDSDEESDSDEESESEDEPSKTPQKKTKDVEMIDADKSSKKAPATPATPSENGGSKTLFVGNLSFSVQRSDIESFFQECGEVVDVRLASDEDGRFKGFGHVEFATAEAAQSALELNGQELLQRGVRLDLARERGAFTPNSTGNQNSGRGQSQTVFVRGFDKSLGEDEIRAKLEQHFASCGQASRVSIPKDYDTGYSKGFAYMDFKDSDSFNKAIELHGSELDGYPLSIDEAKPRESTGFGGRGTPRGGGSRGRGGRFGDRNSGGRFGDRSGGGRSGGRDGGRGGRRGGGRFGFNKPSLAPEGTGKKTTFADD* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3979 581 MobiDBLite consensus disorder prediction 26 68 - -
Psa7g3979 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 423 495 IPR000504 GO:0003723
Psa7g3979 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 392 IPR000504 GO:0003723
Psa7g3979 581 PANTHER BNAA08G02930D PROTEIN 176 534 - -
Psa7g3979 581 SUPERFAMILY RNA-binding domain, RBD 416 532 IPR035979 GO:0003676
Psa7g3979 581 SMART rrm1_1 422 498 IPR000504 GO:0003723
Psa7g3979 581 SMART rrm1_1 326 397 IPR000504 GO:0003723
Psa7g3979 581 MobiDBLite consensus disorder prediction 1 325 - -
Psa7g3979 581 MobiDBLite consensus disorder prediction 270 286 - -
Psa7g3979 581 CDD RRM1_NUCLs 326 402 IPR034349 -
Psa7g3979 581 Gene3D - 408 507 IPR012677 -
Psa7g3979 581 Gene3D - 301 407 IPR012677 -
Psa7g3979 581 MobiDBLite consensus disorder prediction 499 581 - -
Psa7g3979 581 MobiDBLite consensus disorder prediction 287 307 - -
Psa7g3979 581 MobiDBLite consensus disorder prediction 254 269 - -
Psa7g3979 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 421 502 IPR000504 GO:0003723
Psa7g3979 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 401 IPR000504 GO:0003723
Psa7g3979 581 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 176 534 - -
Psa7g3979 581 Coils Coil 29 56 - -
Psa7g3979 581 SUPERFAMILY RNA-binding domain, RBD 317 418 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3979 Psa-Chr7 329060384 329064083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3979 323 491 Eukaryotic Initiation Factors Gene Family AT4G34110 28.655 1.51e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3979 K11294 - gmx:100779929 374.785