Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3947 ATGATGAGGTTGCAGACATATGCAGGTCTTAGTTTAATTGCCACTTTGGCTGTAACATATCATGCATTTAACAGTAGAGGCCAATTTTATCCGGCAATGGTTTATCTGGCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGCTCTAGTCATCATGTGTAGTATGTGGCAGTTAACTAAAAAGGTGTTTCTCGGCTCTCTTCGAGAAGCTGAGGTCGAGAGGCTTAACGAACAAGCTTGGAGGGAGGTTATGGAAATTCTCTTTGCAATTACTATCTTTAGGCAGGACTTTTCTATTACATTCCTTGCTATGGTCACGGCACTCTTGTTTATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTAGAGTACATAGAGACTACACCTTCTGTGTCCGTGTTGTCTCAAGTTCGAATCGTGTCTTTTTTGGGTTTCCTTCTTCTTCTAGATGGCACGTTTTTGTATAGATCAGTGAAGCATTTACTAGCAACGCAGCAGGCGTCGGTTTCGCTCTTCTTTTCTTTCGAGTACATGATACTAGCAACAACAACGGTATCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACGTTTTACTTGGAACTTGTTAAAGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTGGCAATTTTCATAAACTATGGAGTTCCTTTGCACTTAATAAGGGAGCTGTACGAGACATTTAGGAACTTCAAAATCCGTGTTGCAGATTACTTACGTTATCGTAAGATCACTTCTAACATGAATGACCGGTTTCCAGATGCAACCCCTGAAGAGCTTATTGCAAGTGACGCAACGTGCATCATCTGTCGTGAAGAGATGGTTACTGCAAAGAAACTTATATGTGGTCATCTTTTTCATGTTCACTGCCTCCGATCATGGCTGGAGCGGCAGCATACTTGCCCTACATGCAGAGCACTGGTTGTCCCAACGGAAAATGGTAGTACTGCTGCTGGTGGGCAGCAAAGGTCACAGTCAGATGCTCATCGGCATGGGGCAGGCACTGGAAGCTCAGCTCAAACTGAGGTTGCCAATGGGGTGGCATGTGATAATTTGAGTCGGCATCAAGCAAGACTTCAAGCTGCTGCATCAGCAGCTTCAATATATGAGAAGTCTTATGTTTACCCTTCTCCAACTTTTGCATGCCCCCCTGGTTACACTCTTCATCCCATGGTTCAAAGATCCGTGGTTGAATCATCTAATGCCAAGAGAGAACAAGTTTCCAGTGAGCAAGAAGCACAAAAGCAGTTTGTGACCCCAGGTGGACCAATGAATATATCCTCTTCTCCACCATCCCAAACACATGCAGCCCACATGGTTTATGGAGAGGGATCCCAGCTGGGAGCTCAAAGGAAACTCCAGATTGAGAAAGCAAATGTTGACAAAAATATAGGCGAGGAGGACACATCATTGTCAGATAGCAAAGGCAAACAAATTGCTGCCTCTTCATCTCTATCAAGTCATGATGAGAGTCAAGACATCTAA 1560 0.4327 MMRLQTYAGLSLIATLAVTYHAFNSRGQFYPAMVYLATSKISLVLLLNMALVIMCSMWQLTKKVFLGSLREAEVERLNEQAWREVMEILFAITIFRQDFSITFLAMVTALLFIKALHWLAQKRVEYIETTPSVSVLSQVRIVSFLGFLLLLDGTFLYRSVKHLLATQQASVSLFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELVKDLLHLSMYMCFFLAIFINYGVPLHLIRELYETFRNFKIRVADYLRYRKITSNMNDRFPDATPEELIASDATCIICREEMVTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPTENGSTAAGGQQRSQSDAHRHGAGTGSSAQTEVANGVACDNLSRHQARLQAAASAASIYEKSYVYPSPTFACPPGYTLHPMVQRSVVESSNAKREQVSSEQEAQKQFVTPGGPMNISSSPPSQTHAAHMVYGEGSQLGAQRKLQIEKANVDKNIGEEDTSLSDSKGKQIAASSSLSSHDESQDI* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3947 519 Pfam Ring finger domain 291 330 IPR001841 -
Psa7g3947 519 MobiDBLite consensus disorder prediction 499 519 - -
Psa7g3947 519 PANTHER RING ZINC FINGER PROTEIN 1 465 - -
Psa7g3947 519 SUPERFAMILY RING/U-box 272 336 - -
Psa7g3947 519 CDD RING-H2_synoviolin 289 330 - -
Psa7g3947 519 SMART ring_2 292 329 IPR001841 -
Psa7g3947 519 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Psa7g3947 519 PANTHER - 1 465 - -
Psa7g3947 519 MobiDBLite consensus disorder prediction 480 498 - -
Psa7g3947 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 339 IPR013083 -
Psa7g3947 519 MobiDBLite consensus disorder prediction 477 519 - -
Psa7g3947 519 MobiDBLite consensus disorder prediction 340 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3947 Psa-Chr7 327114934 327121156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3947 1 402 C3H Transcription Factor Family AT3G16090 77.228 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3947 K10601 - gmx:100816441 743.421