Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3944 ATGGGAACGCGACCGCAGCAATCGCGTGTAGATGAAGACGATGAGGAACTGCTTGGTTGTGGAACTACGATTTCGGGCCAATCAGGCTCGACTAGCCGGAGTGCTGGGTTGGGGACTACCGCCGGTGATAATGCTGCTCTCAAATTAAACCATCTTGACATACAGGATGATGATGCTGCATCACAGGGAGCAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAACGGGCTGTTGGAGGCGATAAGAGTGGAAGAGGGCTTCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTGGAAAGTAAGGGAAGGACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTGCTGATCCAATCAATAGTGTTTTGTCCCCTGATAAGCAACAATACGATGAGAAAAACATTCGGCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGACATTATCTCTAAGGATAAAAAGGAAATACAATGGAGGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAGCTAAAGACAGAACGTCTTGGGCTCAGGACTAGAATTGAAAGGAAATCATCCTATCTGCAGGAGTTAGAGGAACAATTTGTAGGTCTTCAAAACCTTATTCAACGAAATGAACAATTATATAGCTCTGGAAATCCTCCTAGCGGAGGTGTATCTTTACCCTTTATCCTGGTACAGACACGACCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTTAATAGTACTCCCTTTGAGTTGCATGACGACAATTATGTGCTAAAGGCAATGGAATTTGGCGATAGACCTCAGAGTGATACCGTTACACACAATGTTACAGATGCAGGTGAAGGTTCTAGCATGTCAGGCATGCGGTCACAGGTTCGTCCTTCAGTTTCAAGCGTGTCAACTAGGCCTCCCACATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAACATTGA 999 0.4454 MGTRPQQSRVDEDDEELLGCGTTISGQSGSTSRSAGLGTTAGDNAALKLNHLDIQDDDAASQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINSVLSPDKQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLNDIEELKTERLGLRTRIERKSSYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMEFGDRPQSDTVTHNVTDAGEGSSMSGMRSQVRPSVSSVSTRPPTSPPLPGILKARVKQEH* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3944 332 MobiDBLite consensus disorder prediction 289 332 - -
Psa7g3944 332 PANTHER DP TF 26 332 - -
Psa7g3944 332 Coils Coil 194 214 - -
Psa7g3944 332 SUPERFAMILY E2F-DP heterodimerization region 170 285 IPR037241 -
Psa7g3944 332 PANTHER TRANSCRIPTION FACTOR DP 26 332 IPR015648 GO:0005667|GO:0051726
Psa7g3944 332 MobiDBLite consensus disorder prediction 1 37 - -
Psa7g3944 332 CDD DP_DD 169 272 IPR014889 -
Psa7g3944 332 SMART DP_2 171 330 IPR014889 -
Psa7g3944 332 SMART E2F_TDP_2 81 164 IPR003316 GO:0005667|GO:0006355
Psa7g3944 332 MobiDBLite consensus disorder prediction 289 311 - -
Psa7g3944 332 Gene3D Transcription factor DP 170 310 IPR038168 -
Psa7g3944 332 MobiDBLite consensus disorder prediction 60 82 - -
Psa7g3944 332 SUPERFAMILY "Winged helix" DNA-binding domain 84 165 IPR036390 -
Psa7g3944 332 MobiDBLite consensus disorder prediction 21 37 - -
Psa7g3944 332 PIRSF Txn_factor_DP 12 332 IPR015648 GO:0005667|GO:0051726
Psa7g3944 332 Pfam Transcription factor DP 172 286 IPR014889 -
Psa7g3944 332 Gene3D - 76 169 IPR036388 -
Psa7g3944 332 Pfam E2F/DP family winged-helix DNA-binding domain 84 164 IPR003316 GO:0005667|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3944 54 273 E2F-DP Transcription Factor Family AT5G02470 51.584 3.43e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Psa7g3944 DP 2.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3944 K04683 - qsu:112000390 506.908