Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3905 ATGGACCAACAACGTGTCGAAGGAGAAGTGGATAATGATAGTATAATTTTGACTTTTCGGTGGAATGCTACCAGGCGTGTCTATGAAATGTATCGTCATAGGAGAGGTGACAACAACCAACCACCTTTTCTTAATGAGGATTGGGACATGCGCATTTATACTCAAAATGACCACATGATTTTTCGTGAAAATTCCAACAATCGGAGGGTAAGAAGAATTAGGATTGGCGAAGGAGAATCAGGCTCTGGAAACAGCATTACTTGCACCATATGTCTTGAAGAATTTCCTGTTGGGTTAGAAGTGATTCAATTGCCTAGACCTTGCTGTCATATGTATCATCAAGATTGTATAATAAGGTGGCTCCGCAACTCTAACACATGCCCATTGTGTCGTAGGCCTGTTTCTTAA 408 0.4093 MDQQRVEGEVDNDSIILTFRWNATRRVYEMYRHRRGDNNQPPFLNEDWDMRIYTQNDHMIFRENSNNRRVRRIRIGEGESGSGNSITCTICLEEFPVGLEVIQLPRPCCHMYHQDCIIRWLRNSNTCPLCRRPVS* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3905 135 SMART ring_2 88 130 IPR001841 -
Psa7g3905 135 Pfam Ring finger domain 87 131 IPR001841 -
Psa7g3905 135 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
Psa7g3905 135 SUPERFAMILY RING/U-box 87 134 - -
Psa7g3905 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 135 IPR013083 -
Psa7g3905 135 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKE 76 134 - -
Psa7g3905 135 PANTHER SI:CH211-59O9.10 76 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3905 Psa-Chr7 324942100 324943974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3905 70 131 Rapid Response to Elicitors AT2G35000 43.548 7.66e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3905 - K11982 cam:101490108 143.665