Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3894 ATGGGTTGCTTATGTTCCAAGAGTTCAGCTGTAGAAGACAGCAATGAAAGTACCTCAAAGAAATTGCAATCAAGTAGCACAAGAGCTTCAGAGTTGAATGTTTTGAGGTTGAGTTCTTCCAAGAGGGTTGAAAGTGGAGGTGATGTGAAAGTGAAATCAAATGGATCAGTGCAGTTGTATGATGATCAAAATGGGAGGAAGAAGAAAGTTGAAAAGCATGAATTGACTGGAATTGATCATCCTGGATTTGGAAGGGTTCCGAAGGCTATAGAAGCCGAACAAGTTGCGGCTGGATGGCCGGCGTGGCTTTCTTCTGTAGCTGGTGAGGCTATCAAAGGATGGATACCGCGAAGTGCAACTACTTTCGAGAGGTTACATAAAATTGGGCAAGGAACTTATAGTACGGTGTATAAGGCTCGTGACGTAACTAATCAGAAGATTGTTGCGTTGAAGAGGGTGCGGTTTGATAATCTTGATCCCGAGAGTGTCAAGTTTATGGCAAGAGAGATACATATTCTGCGTAGGCTCGACCATCCAAACATAATAAAACTGGAGGGTTTGATAACCTCGGAAACATCTCGTAGCTTGTACCTTGTTTTTGAGTATATGGAACACGACTTAACAGGACTTGCTTCAAATCCTACCATCAAATTCTCCGAACCGCAGCTGAAATGCTACATGCGTCAACTTCTTAGTGGACTGGATCATTGTCATAGTCATGGTGTTCTTCATCGTGATATAAAGGGCTCAAATCTTCTCATTGACAACAATGGTGTTTTAAAGATTGCCGATTTTGGTTTGGCAAATGTTTTTGACTCTCATCACAATATTCCATTGACAAGCCGCGTAGTAACACTGTGGTACAGACCGCCAGAACTTTTACTCGGAGCAAATCATTATGGGGTTGCAGTGGATTTATGGAGCACTGGTTGCATTCTGGGGGAGCTATATACGGGCCGGCCCATTTTGCCAGGAAAAACCGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGCGGCTCGCCATCTGAGGACTATTGGCTTAAGTTACGGTTGCCACATTCAACAGTATTCAAGCCTCCACACCATTATAGGCGATGCGTTACGGATACGTTTAAGGAATACTCATCAACTGCTCTTAAGCTTATAGAGACCCTACTTTCTGTAGATCCATCGAATCGAGGGACAGCAGCAGCTGCTCTGAAAAGTGAGTTCTTCACATCAGAACCTTTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTAGCAAAGAGATTGACGCTAAAATGCGAGATGAAGCATCCAGAAGGCAAGGAACGGTTGGAGATAGGGAACAAAAAGTTGGCTCATCGGTTAGACAAGAAAAAGCACCTAGGGCCGTTGTTTCAACAAAAGACAATGCCGACATGGGCGCATCAGTACAGCAGAAACACTATTCCTTCTCGAAGAACCGAAGCGAATTGTCCTATCCGCATAGAGAACACGTGTCCGGGATTGCAGGTTTCCCACACAAACAATCAGAAGATGCTAGAGAAATGGAAAATAACGCATCCGGTCATTTTTACAAGAGACCTTCCCATTCAGGCCCATTGGCTCCCGGTTCAGGCTGGGCAAGGGGCGTGAAGGAAGTTGATAACGGGCCTACTGTTTCAAACAGAGTGAACCTATCAAAACTATCCGGGCTGGTAGCATCTAGAACTTTAACGTCTGAAGATCAGGAGCCAAAGCCAGTTCCCTTTCCCAACAGAAAACCAATCGAAGTAAGAAAGTCGCTCGAGGCGACTAGTGGGTCCGAGTCAAGAAGAAGGCGGGATAAAAAACGGATCGTCGATCACAGTCAAATTGTAAATAGAAGAGTCCCGACCGAAAAATCAACTCCGGATGGACATGGATCGAGTGGAAACAAGATATACATGTCAGGTCCATTACTGGCATCATCAAACAACATGGATCAGATGCTGAAAGACCACGATCGTAAGATCCAAGAGTTTTCAAGACGAGCGAGAGGTGAGAAAGTCCGTGCACAGCGAAAGTAG 2040 0.4466 MGCLCSKSSAVEDSNESTSKKLQSSSTRASELNVLRLSSSKRVESGGDVKVKSNGSVQLYDDQNGRKKKVEKHELTGIDHPGFGRVPKAIEAEQVAAGWPAWLSSVAGEAIKGWIPRSATTFERLHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHILRRLDHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLASNPTIKFSEPQLKCYMRQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLANVFDSHHNIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVTDTFKEYSSTALKLIETLLSVDPSNRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKMRDEASRRQGTVGDREQKVGSSVRQEKAPRAVVSTKDNADMGASVQQKHYSFSKNRSELSYPHREHVSGIAGFPHKQSEDAREMENNASGHFYKRPSHSGPLAPGSGWARGVKEVDNGPTVSNRVNLSKLSGLVASRTLTSEDQEPKPVPFPNRKPIEVRKSLEATSGSESRRRRDKKRIVDHSQIVNRRVPTEKSTPDGHGSSGNKIYMSGPLLASSNNMDQMLKDHDRKIQEFSRRARGEKVRAQRK* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3894 679 MobiDBLite consensus disorder prediction 567 679 - -
Psa7g3894 679 SUPERFAMILY Protein kinase-like (PK-like) 117 414 IPR011009 -
Psa7g3894 679 MobiDBLite consensus disorder prediction 627 652 - -
Psa7g3894 679 PANTHER CYCLIN-DEPENDENT KINASE 37 670 - -
Psa7g3894 679 SMART serkin_6 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g3894 679 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Psa7g3894 679 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g3894 679 MobiDBLite consensus disorder prediction 425 453 - -
Psa7g3894 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Psa7g3894 679 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g3894 679 PANTHER CELL DIVISION PROTEIN KINASE 37 670 - -
Psa7g3894 679 MobiDBLite consensus disorder prediction 1 28 - -
Psa7g3894 679 CDD STKc_CDK9_like 122 406 - -
Psa7g3894 679 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Psa7g3894 679 MobiDBLite consensus disorder prediction 412 463 - -
Psa7g3894 679 Gene3D Transferase(Phosphotransferase) domain 1 205 445 - -
Psa7g3894 679 MobiDBLite consensus disorder prediction 587 619 - -
Psa7g3894 679 MobiDBLite consensus disorder prediction 653 671 - -
Psa7g3894 679 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3894 Psa-Chr7 324031049 324035174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3894 114 459 Core Cell Cycle Gene Families AT5G10270 47.514 1.11e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa7g3894 Pkinase 1.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3894 - - gmx:100807590 1083.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3894 7 324031049 324035174 Psa7g3894 7 324031049 324035174 ECH