Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3878 ATGTCGCTGCAGACTCTGAAGGAAACTCTCAGACATTGCACAACCCAACAATCACAACCATCTTCTTCTTCTTCCTCCCAATCCAATTCTATTCTCCTCAATTTTGATTCCCATTTCCCAATCCACAGAAAACCCCCTAAATCCTCTCTTGCCGATCAGCTTCGCCTCCTTCAAGACCCGGACGATCCATCTTTTCACCCACACAACTTCCTTTCACAACAAAACGAATCCAAAACCCTACAAAAACAACAACAAGTTAAACTAGAAGAAGTGGAAGATGACGACGATGAAGAACAAGAGTCAGAGACAAAGAGGGTGAAATTCAGTTCAGCCAAAGCGTCTCACTTTCAATTCGATCATACTGGACCCTTTGAGCCTTTGGTCTTGTCCTCTAATGGAGAATTTCCTATAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGATCATCAGAGAGTGGGAGTGAAGTTTCTGTATGAATTGTACAAGAAGAATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACGATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGAGAATCTGTTCATAGTGAGAAACAAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCGTTATTCACAACTGGGAGAGTGAATTTTCTAAGTGGTCCAACTTCAGTGTTTCCATTTATCACGGTGCAAACCGCGATTTAATATATGATAAATTGGAAGCAAACGGAGTGGAGGTACTTATTACCAGTTTTGACACTTATAGGATTCATGGTAACAGTTCTTTGTCAAATATCCACTGGAACATTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTGCGACGATATGGTCTTACTGGGACTGTAATGCAAAATAAGATCTTAGAATTGTTCAATCTCTTTGATTTGGTAGCACCTGGATCCCTTGGAACACGGGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAGCACCTTGTTGTGGTTCTTAATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATTTGCAAAAACGTGTTTATAGGAGAATGATCCAGCTTCCTGACATTCAGTGCCTAATAAATAAAGACCTGCCTTGTAGTTGTGGTAGTCCTCTTACTCAAGTTGAGTGTTGCAAAAGGATAGTCCCGGATGGAGCTATGTGGCCTTACCTTCACAAAGATAACCCCGATGGATGTGATTCGTGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAGTTAAAGATGCAAAGTTTGCTGCTGCTGTCTATGGCCCAGACATTGACTTAGTTGGCGGGAGCATACAGAATGAGAGTTTCATGGGTCTAAGTGATGCAGAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTCTCATGGTTTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCGACTCCAACTAATTTACGCCAGTCTCTGGTTGATGATTTCAACTCTAGTCCTAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCGAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCTTTTCGATATGGTCAGAAACGGCATGTTGTGGTATTCCGTCTTCTCGCAGCTGGTTCACTTGAAGAACTTGTTTATTCTCGTCAGATTTACAAGCAGCAGCTCTCAAACATCGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGTAAGGAATTCAAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTATTTACCAGCGAAATCGTTGAAGTGCATGAGACGAGTAAAAAAGACAAGCTTAATACAGAACATGAAAAAATAGAAGAAACTGGTTTATTAGCATCAGATTCTGAAACCAGGTTATGTGCTGAATCTACGGGTGCTTCAACAAGTAAACCAGATATTGAATATGAAGACCTCGGCATTGTTTACGCTCATCGCAACGAAGACATTGTCAACTCCCGACCAGCTATTCAAGAGCAGTTATCTACGAGCGGCGCCCCTTCAAGTGACAGCTTAAGCAAGTCAAACATCTCTTTAGTCCATCAAAGGAAAAAACCAGATTGTGTACCTAAAAGACAGAAAATTCCTTTGATTGATGAAAGGAAGAGAACCAAATTTAGCCTCCTTGCAAAGTCTATGGGTATGGAAGAGCTTGCATTTAGCAAATGGTTACTATCTGCAACTCCAGTAGAGAGAGAAAAAGTGCTTATAAACTACAACAAGAAAAAGAAAAAGCTTAAATCCTTGCAAAGTCTATGGGTATGGAAGAGCTTGCATTTAGCAAATGGTTACTATCTGCAACTCCAGTAG 2727 0.4074 MSLQTLKETLRHCTTQQSQPSSSSSSQSNSILLNFDSHFPIHRKPPKSSLADQLRLLQDPDDPSFHPHNFLSQQNESKTLQKQQQVKLEEVEDDDDEEQESETKRVKFSSAKASHFQFDHTGPFEPLVLSSNGEFPIVQVPASINCRLLDHQRVGVKFLYELYKKNHGGILGDDMGLGKTIQTIAFLAAIFGKEGESVHSEKQVEKRDPVLIICPSSVIHNWESEFSKWSNFSVSIYHGANRDLIYDKLEANGVEVLITSFDTYRIHGNSSLSNIHWNIVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKILELFNLFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVVVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMIQLPDIQCLINKDLPCSCGSPLTQVECCKRIVPDGAMWPYLHKDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQVKDAKFAAAVYGPDIDLVGGSIQNESFMGLSDAEHCGKMRALEKLLFSWFSHGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRYGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIVEVHETSKKDKLNTEHEKIEETGLLASDSETRLCAESTGASTSKPDIEYEDLGIVYAHRNEDIVNSRPAIQEQLSTSGAPSSDSLSKSNISLVHQRKKPDCVPKRQKIPLIDERKRTKFSLLAKSMGMEELAFSKWLLSATPVEREKVLINYNKKKKKLKSLQSLWVWKSLHLANGYYLQLQ* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3878 908 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 541 694 IPR001650 -
Psa7g3878 908 Gene3D - 128 381 IPR038718 -
Psa7g3878 908 CDD SF2_C_SNF 535 661 - -
Psa7g3878 908 Pfam SNF2-related domain 164 421 IPR000330 GO:0005524|GO:0140658
Psa7g3878 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 705 IPR027417 -
Psa7g3878 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 382 IPR027417 -
Psa7g3878 908 PANTHER SNF2/RAD54 FAMILY MEMBER 44 868 - -
Psa7g3878 908 Gene3D - 394 748 IPR027417 -
Psa7g3878 908 MobiDBLite consensus disorder prediction 1 31 - -
Psa7g3878 908 SMART ultradead3 144 340 IPR014001 -
Psa7g3878 908 SMART helicmild6 567 650 IPR001650 -
Psa7g3878 908 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 44 868 - -
Psa7g3878 908 Pfam Helicase conserved C-terminal domain 538 650 IPR001650 -
Psa7g3878 908 MobiDBLite consensus disorder prediction 70 106 - -
Psa7g3878 908 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 332 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3878 Psa-Chr7 322640546 322645446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3878 607 693 RAD5 or RAD16-like Gene Family AT3G16600 39.080 5.25e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa7g3878 SNF2_N 2.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3878 K20098 - gmx:100781003 1363.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3878 7 322640546 322645446 Psa7g3878 7 322640546 322645446 ECH