Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3870 ATGGTTGAGGTTGAAGCTCAAAGGTTGGAGGTTTGTTTTGTTAAGAGGAAGGAAGTGGTGTTTGGATGGTTGGTGTTTATGTTGTTTCTTAGTCCTGTTGTTGGTCTCAGACCCTTGAGGGATAAAACTGGTTCTTGGGGCGATGAGTGGATTTTTTCCGGAAAAGATGAAAGCGACATAGGTCCTTTTTCACAATGGAATATAACCGGAACGTACCGAGGGACTTGGAAGTTTTTAGATAATACAAATGGCTCTTCTAGATTTCCAGACATCAGAAAAATAAATGGAAATTCCGTAATTGAATTAGTTAGTACGCCTACAAAGATAACCGGGGTACATTACGTGCAGGGAGTGGTTATATTCCATGACGTGTTTGACAATGAATACAATGTCGGCGGTGCTCAAATCAAAATAGAAGGTGTATATATATGGCCTTTTAGACAACTTCGAATGGTAGCCAACAGCGGAAAAGACGGAGGAGGGTTGAATCAAGATGGAGATTATATTCTATCCAATCCATATCATCTGCTTGGAGTTTTCTCGTCTCAAGTATTCCAAGAATCTTCGCGACATACCATGTGGAGACGAAAGCATTCTCCGTTGCACGGCATGGAGAAAAATTGTAATGTTGAAATTTCAGCACGGGTTTCACGCTTGTCATCGTCAAAACACGAAGGGGAGCACGATTCTTTTCAGCTGGAAGGATTAATGGAAAGTCCCTCCGTGGATGATGACGGAGATTGCATCTCACCGTTACAGTTAAATGCAACATCTATTAATATTGGAGCCTACTACAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCATTCTTGCAAGTTCTTCTTTTGATTCGGCAAATGGAGCATAGCAACACCCAATCTGGCGCTGCAAAGGTTTCGATAATAATGATTGGTCAGCAAGCTATAGTGGATGCTTATCTTTGCCTCGTACATCTGACGGCGGGAATACTAGTCGAGTCCTTGTTCAACGCTTTTGCAACTGCTGCATTCTTCAAGTTCGTAGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCAATTTGGAAGGCAAGTCGGCCTTTGAGTAACGGCGAAGGTTGGGAGACAATGAGGCGCGAGCTTTCCGTTTTATACAGCCGTTTCTATGGGATCCTGTTGGGGGGAATTCTATTCATGTACGAATTCCATTATTATTTGAAACCTATTCTACTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAACATTGTTCGCGATTCGCGCAAACCGTTGCATCCTCATTATATATTAGGCATAACTGTTACTCGGCTAGCAATCCCATTATACGTTTTCGGCTGTCCTAACAACTTCTTGCGCATAGAACCAGATCACACCTGGTGCGCTTGTTTGGTTTTATTTACCGGATTTCAAGCCGCAATTCTCCTTCTTCAGCATTATCTCGGCTCCCGTTGGTTCATTCCTCATCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTCTTCTTCTCAGGATACGAATCACGCGACAGACTGTGTTATTTGCATGACAGGCATTGATCTCACGCCACGATCAAATGATTGTATGGTGACGCCTTGTGATCATTTTTTCCACACCGGCTGTTTACAAAGATGGATGGATATAAAGATGGAGTGTCCAACATGCCGGCGCCCGCTCCCGCCTGCATGA 1704 0.4266 MVEVEAQRLEVCFVKRKEVVFGWLVFMLFLSPVVGLRPLRDKTGSWGDEWIFSGKDESDIGPFSQWNITGTYRGTWKFLDNTNGSSRFPDIRKINGNSVIELVSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIKIEGVYIWPFRQLRMVANSGKDGGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHTMWRRKHSPLHGMEKNCNVEISARVSRLSSSKHEGEHDSFQLEGLMESPSVDDDGDCISPLQLNATSINIGAYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIVDAYLCLVHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILFMYEFHYYLKPILLLVYSFWIPQIITNIVRDSRKPLHPHYILGITVTRLAIPLYVFGCPNNFLRIEPDHTWCACLVLFTGFQAAILLLQHYLGSRWFIPHQILPEKYSYYRRSSSQDTNHATDCVICMTGIDLTPRSNDCMVTPCDHFFHTGCLQRWMDIKMECPTCRRPLPPA* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3870 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 567 IPR013083 -
Psa7g3870 567 PANTHER RING ZINC FINGER PROTEIN 18 567 - -
Psa7g3870 567 SMART ringv_2 516 561 IPR011016 GO:0008270
Psa7g3870 567 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 18 567 - -
Psa7g3870 567 ProSiteProfiles Zinc finger RING-type profile. 517 561 IPR001841 -
Psa7g3870 567 SUPERFAMILY RING/U-box 516 566 - -
Psa7g3870 567 Pfam Ring finger domain 516 561 IPR001841 -
Psa7g3870 567 SMART ring_2 517 560 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3870 Psa-Chr7 321448457 321453419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3870 517 564 C3H Transcription Factor Family AT4G12190 39.583 1.87e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3870 K23788 - gmx:100802452 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3870 7 321448457 321453419 Psa7g3870 7 321448457 321453419 ECH