Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3869 ATGGCTTCAACTTCATCAACATGTATATTATTATTCCTCTTTTTTCTGTATTCCTCTTTTTTCTTCAACAACTTTAATGCAAAACACAGCATAACCAACAATCACAAGCATCTCCACAGGCACAACAATAACCACAATCCACCATTAAACATTCGGCTTTATCGCGCTTTTCTTGCGCTGCAAGCATGGAAGCACGTCATCTACTCAGATCCACATAACATCACTTCCAATTGGGTAGGTCCTTCAGTTTGCAACTACACAGGTATCTACTGTGCTCCATCACTAGATGATCCTAAAACAAAAGTTGTCGCGGGAATCGACCTTAACCACGCAGACATAGCCGGATTCCTACCCGACGAATTAGCCTTCCTGTGTGACCTTTCGATTCTCCACCTCAACAGCAACCGTTTCTGCGGCATTGTTCCAGAAACCTTCGCCAATCTAACACGTCTCTCTGAGCTTGACCTTAGCAACAACAGATTCGTCGGACCGTTTCCTTCTGTTGTTCTTTCCCTTCCTTCCCTTGTCTATCTAGACCTTCGTTACAACGAGTTCGAAGGGTCGTTACCTACTCAACTTTTCGACAAACCTTTCGATGCTTTTTTTCTTAACAACAATCGCTTCACAAGTTCTATTCCAAGAAATTTAGGAAAAAGCAAAGCTTCTGTCATGGTTTTCGCTAATAACAAATTCGGAGGATGTTTACCAGAAAGCATAGTAAACTTCGCCGATACTTTAGAAGAACTTCTCTTAATTAACACAAGCATATCAGGTTGTCTTCCAATACAAGTTGGATTTCTATACAAATTGACAGTTTTGGATGTTAGTTTCAACAATATTGTTGGTCCTATACCTTATAGTCTTTCAGGTTTATCTCATTTGGAGCAGTTAAATATAGGACATAACATGATGAGTGGAATAGTTCCTATGGGAGTTTGTGCTTTACCAAACTTGGTGAATTTCACTTTTTCTTACAACTTTTTCTGTGAGGAAGAGGGTATTTGTAAGAATCTGACATCAAAGAAGATAGTTTATGATGATCGGCGCAATTGCTTGCCGAACAAGGCACTGCAGAGAAGTGAAAAGGAATGTAGAGCCAAACTTGAACAGCCACCAGTTGATTGTTTTGAGGTTTGTTGTGTTGAAAGTGGTTTTGGGAAGAATGTTAGTGTTGGTTCTGTGGCTATTCCACCTTCTGCAATTCCAGTAGCAGCAATGCCAGTTTCTGCTCCTATTCTTGCACCAAGATACCCCTGA 1257 0.4049 MASTSSTCILLFLFFLYSSFFFNNFNAKHSITNNHKHLHRHNNNHNPPLNIRLYRAFLALQAWKHVIYSDPHNITSNWVGPSVCNYTGIYCAPSLDDPKTKVVAGIDLNHADIAGFLPDELAFLCDLSILHLNSNRFCGIVPETFANLTRLSELDLSNNRFVGPFPSVVLSLPSLVYLDLRYNEFEGSLPTQLFDKPFDAFFLNNNRFTSSIPRNLGKSKASVMVFANNKFGGCLPESIVNFADTLEELLLINTSISGCLPIQVGFLYKLTVLDVSFNNIVGPIPYSLSGLSHLEQLNIGHNMMSGIVPMGVCALPNLVNFTFSYNFFCEEEGICKNLTSKKIVYDDRRNCLPNKALQRSEKECRAKLEQPPVDCFEVCCVESGFGKNVSVGSVAIPPSAIPVAAMPVSAPILAPRYP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3869 418 PANTHER EXTENSIN-LIKE PROTEIN 10 416 - -
Psa7g3869 418 Pfam Leucine rich repeat 269 326 IPR001611 GO:0005515
Psa7g3869 418 Pfam Leucine rich repeat 127 184 IPR001611 GO:0005515
Psa7g3869 418 Gene3D Ribonuclease Inhibitor 224 375 IPR032675 -
Psa7g3869 418 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 416 - -
Psa7g3869 418 SUPERFAMILY L domain-like 57 343 - -
Psa7g3869 418 Pfam Leucine rich repeat N-terminal domain 58 91 IPR013210 -
Psa7g3869 418 Gene3D Ribonuclease Inhibitor 57 223 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3869 Psa-Chr7 321430297 321431992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3869 50 383 Leucine-rich Repeat extension Gene Families AT3G24480 54.790 1.45e-132 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3869 - - gmx:100782629 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3869 7 321430297 321431992 Psa7g3869 7 321430297 321431992 ECH