Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3859 ATGAGTAGTGTACTTTGTGAAGAGCAACAAAAGCTTCTTCTCAATCTCAAAAAATCTCTCACTATGAGAGACAACATTATCGACAACATCCCACCAAGAAAGCTCCTCACCCGCCGACAATCCACCAACACCTCCGCCGACATGTTTTCCGAGGAAGATCCTTATTCCTCCGACCACTTCCGCATGTACGAGTTCAAAATCCGGCGATGCACACGTAGCCGCAGCCACGACTGGACTGACTGTCCCTTCGCTCACCCTGGCGAAAAGGCTCGCCGCCGTGACCCTCTCCGGTTTCAATACTCCGGTGAAGTTTGCCCTGATTACCGCCGCGGAAACTGCGAACGCGGCGACGCGTGTGAATTCTCGCACGGCGTTTTTGAATGCTGGTTGCACCCTTCGAGATACAGAACTGAAGCTTGTAAAGATGGTAAGAATTGTAAGCGGAAAATTTGCTTTTTTGCTCATACACCCCGTCAACTCAGGGTTTTGCTTTTGCCACCCCCTCCTTCTCCACCTCCTCAGAACAACGTTAAAAACTGTTGTTCTTTTTGTCATTGCTGTTCTAATTCTTCTTCTTCGTCACCCACTTCTACTTTGTTGAGTGGACCTTATTTTTCTTCTTCGAATTCACCACCTTTGTCACCTTTGTCCAATTCAAATTCCAAAGATGTGCATGTTCTTAACGAGCTTATTCGATCTATGGAAAGTTTCAATTTTGGTGGTGATGATTCTCCTGTTTCTGCTTTGGGCGGTGGAAAATATTATAATTCAAGTGGTAGTAGCAAGTTTTTGAGGGAAGAACAAAGGATTAACGTTGTTGAGGATGATGTCAGTGCCAACCCAGATTTTGGGTGGGTGAATGAGTTGCTCATGTAG 876 0.46 MSSVLCEEQQKLLLNLKKSLTMRDNIIDNIPPRKLLTRRQSTNTSADMFSEEDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRFQYSGEVCPDYRRGNCERGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRVLLLPPPPSPPPQNNVKNCCSFCHCCSNSSSSSPTSTLLSGPYFSSSNSPPLSPLSNSNSKDVHVLNELIRSMESFNFGGDDSPVSALGGGKYYNSSGSSKFLREEQRINVVEDDVSANPDFGWVNELLM* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3859 291 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Psa7g3859 291 SMART c3hfinal6 134 157 IPR000571 GO:0046872
Psa7g3859 291 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Psa7g3859 291 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 124 IPR000571 GO:0046872
Psa7g3859 291 Gene3D - 97 163 - -
Psa7g3859 291 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 37 233 - -
Psa7g3859 291 PANTHER UNKEMPT FAMILY MEMBER 37 233 IPR045234 -
Psa7g3859 291 SUPERFAMILY CCCH zinc finger 100 124 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3859 Psa-Chr7 321127447 321129188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3859 55 161 C2H2 Transcription Factor Family AT5G07500 66.355 3.81e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa7g3859 zf-CCCH 5.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3859 K23047 - gmx:100820375 261.536