Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3849 ATGGTTATGAAACCAAAGAATGTCAATCTCAAGATCAACAAGCCTTCTAATAATGCAACGGAGATTCATTTCAGAGGCGTGAGAAAGCGACCGTGGGGTCGTTACGCCGCCGAGATTAGAGATCCCGGCAAGAAAAGCCGCGTTTGGCTAGGCACCTTCGACACCGCGGAAGAAGCCGCTAGAGCCTACGACGCCGCCGCTCGTCAGTTCCGTGGTTCGAAAGCCAAGACTAACTTTCCTCCTCCTTCCGACAACAAAGAGAATACCGTCAACAACAATCAGAGTCCCAGCCAGAGCAGCACCGTTGAGTCATCTACTCCAGAGCGTGCTCTCACGCGCTCTCGTGAAGTTCCTGTTGGTGGTGGCGTTATGGATCGTTTTCCGTTTCTCTCGATCCAGCAACCAATCATGCCGTTTCCCGGTGCCGGTGCTGGTGCTGTTGATGGAATGGTAACAACGGCTGTGCACCCGGTTTTCTTTTATGACCCATCCGGTCGAGCTGAGTATATGAACCAGCGGTTTTCGACCAGGTTCGAACCAGGTCCGGTTGAGTTTAACTTTAGCGGTGGGGTTCAGAGTGATTCGGATTCGTCTTCTGTTGTTGATTGTCAGCCAAAGAGAGTTCTCAATCTTGATCTTAACTTAGCTCCACCAATGGAAGTTTAA 666 0.5075 MVMKPKNVNLKINKPSNNATEIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGSKAKTNFPPPSDNKENTVNNNQSPSQSSTVESSTPERALTRSREVPVGGGVMDRFPFLSIQQPIMPFPGAGAGAVDGMVTTAVHPVFFYDPSGRAEYMNQRFSTRFEPGPVEFNFSGGVQSDSDSSSVVDCQPKRVLNLDLNLAPPMEV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3849 221 MobiDBLite consensus disorder prediction 76 108 - -
Psa7g3849 221 PANTHER ERF FAMILY PROTEIN 3 207 - -
Psa7g3849 221 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Psa7g3849 221 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Psa7g3849 221 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Psa7g3849 221 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Psa7g3849 221 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Psa7g3849 221 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Psa7g3849 221 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Psa7g3849 221 MobiDBLite consensus disorder prediction 72 117 - -
Psa7g3849 221 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Psa7g3849 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3849 Psa-Chr7 320780530 320784568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3849 21 219 AP2-EREBP Transcription Factor Family AT5G44210 48.276 1.28e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa7g3849 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3849 K09286 - gmx:100801924 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3849 7 320780530 320784568 Psa7g3849 7 320780530 320784568 ECH
Psa7g3849 7 320780530 320784568 Psa1g4650 1 353696644 353698284 ECH