Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3848 ATGCTTGCGGTGTCACCATTGAGGAGCATCAACAAAGATGAGAACCAAGAAGGGATGGAGAGTTTTTCCATGGGGAGGAATACTTCAATTACAACCGGCGAATTCGGCGACGGAAATATATTGGAAACCATTAACTTCGACGACGACTTCTTTATTGGCATCAACATGGACGGAGACATCTTGCCGGATTTGGATATGGATTCGGAGATTTTCGCCGAGTTCTCCGAATCAGAGATAAACTCATCCGCCATCAAGAAAGCGGATGAAAATAATCATTCAAAGGAAGAAGAAGATAAAGTGGGTTCGGAAGAGATATTGAGCAAAAGAGATGAATCTGTTGTTGTGAATCCATTGCCGAAAAATGGTGGAAAAGGAAGAAAATCATCGAGTCAATCTAAGAATCCTCAAGGGAAGAAAAAAGTCAAGGTGGATTGGACACCAGAATTGCATAGGAGATTTGTGCAAGCAGTGGAACAACTAGGATTGGATAAAGCAGTCCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCCAGCCACCTTCAGAAATATAGGTCCCATAGAAAACATGTGTTAGCGCGTGAAGCAGAAGCAGCAAACTGGAATCAAAGAAGACATGTGTATGGTGGTGTAGTAGGAGGGAAGAGAGAAGTGATCAGTTCATGGCCAACTCCTGCAGCAGCACCTGCCATGGGTTTTCCTCCTCCTCCTCCTCCTTCCATGATTCCATTGCACCATGTTAGACCCTTACATGTATGGGGACATCCTTCAATGGATCTATCATTTATGCACATGTGGCCGCAGCCGCAGCCACCACCGCAACCGCTCTCGTGGCCACCAACATCACCTCAAGACCCTTCATTTTGGCATTCTCAACACCAACAGAGATCTTTTGGATGTCAACTCCCCAGCATCCCACCGCATGGTATGTACAACGCAGATCACAGCATTCCCGCGGCCGGTCCTGCTTCTGGTCCCGGTCACTTATTCGACTTCCATCCGTCAAATGAGAGCATAGATGCAGCTATTGGAGACGTTTTATCAAAACCATGGTTGCCGCTACCACTTGGACTTAAAGCTCCAGCACATGACAGCGTAATGAGTGAATTAAAAAGACAAGGAATTTCAAACATTCCACCCTCATGA 1167 0.4567 MLAVSPLRSINKDENQEGMESFSMGRNTSITTGEFGDGNILETINFDDDFFIGINMDGDILPDLDMDSEIFAEFSESEINSSAIKKADENNHSKEEEDKVGSEEILSKRDESVVVNPLPKNGGKGRKSSSQSKNPQGKKKVKVDWTPELHRRFVQAVEQLGLDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHVLAREAEAANWNQRRHVYGGVVGGKREVISSWPTPAAAPAMGFPPPPPPSMIPLHHVRPLHVWGHPSMDLSFMHMWPQPQPPPQPLSWPPTSPQDPSFWHSQHQQRSFGCQLPSIPPHGMYNADHSIPAAGPASGPGHLFDFHPSNESIDAAIGDVLSKPWLPLPLGLKAPAHDSVMSELKRQGISNIPPS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3848 388 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 388 - -
Psa7g3848 388 MobiDBLite consensus disorder prediction 1 25 - -
Psa7g3848 388 MobiDBLite consensus disorder prediction 278 298 - -
Psa7g3848 388 Pfam Myb-like DNA-binding domain 143 192 IPR001005 -
Psa7g3848 388 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 140 194 IPR006447 GO:0003677
Psa7g3848 388 MobiDBLite consensus disorder prediction 82 142 - -
Psa7g3848 388 MobiDBLite consensus disorder prediction 82 110 - -
Psa7g3848 388 Gene3D - 137 198 - -
Psa7g3848 388 SUPERFAMILY Homeodomain-like 139 197 IPR009057 -
Psa7g3848 388 MobiDBLite consensus disorder prediction 9 25 - -
Psa7g3848 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 196 IPR017930 -
Psa7g3848 388 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 388 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3848 Psa-Chr7 320638803 320641730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3848 1 278 G2-like Transcription Factor Family AT5G44190 43.345 1.64e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa7g3848 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3848 - - gmx:100799248 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3848 7 320638803 320641730 Psa7g3848 7 320638803 320641730 ECH
Psa7g3848 7 320638803 320641730 Psa5g6288 5 535122345 535124914 PCT