Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3842 ATGGAGGGTTGTTTTCAAGGAGAGGAGAACAAGGTTAAGCGCAAAATGAAGTCTGCTTCACAGTTGGAGATTCTGGAAAAAGCATATGCTGCGGAGCTTTATCCATCTGAGGCGTTGAGGGCTGAGTTATCTGTGAAGTTGGATTTGTCTGATCGTCAGTTACAGATGTGGTTTTGTCACCGGAGAGTGAAGGATAGGAAGGTTTCGCCGATGATTAATAAGGCTGCTGCGCCGAGTTTGGCTCCAATGGGAGAGGAGGGTGTTGAGCAAATAGCAGTTGCTGATGATGTTATGCATGATTCTGGGTTGGTTTCTATTCTGAGGCCAATTGGTCATGTGGATGCACAGCGGGTTGTGACACAGTATGGGGTGATGGAAAGCAGTAGTTACCATGAAGCTCATCAGACATTGCAGGAGCTGCGAGCTGTTGCGTTGGTGGAAAGACAGTTGGGGGAGACATTAAGAGAGGATGGACCTATTCTCGGGATGGAGTTTGATTCCTTGCCGCCGGGTGCATTTGGTGCACCATTAGGGGCAGTGGCAATGGGACAAAACAGCCAATCTGAATGGCCTGTTGAGGCAAAAGTTTATGAACATCTGGATAAGGGCATTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAGCAGCCAACTGTTAGAAATGAGATATATGAGAGAGATACTACATCTGTTCACTTTAGTTCTCTTGATGGTGTTCCCCATTCTAGTGGGCTGTCTTTCCTTAATGGGAATGAATCTGCACCTAAGGTGTATGGAGTTCAAGGTCAGAAGATACCTGGTCTAAATCTTTTGTCTGAGTCTCAGCAAGGTAGGCCAAATCATCTTATGCTTTCTGCTTCAGGAGGGAATGATGATGTTCCACGAAAGAACCCATCGACACCATTTGTCGATGTAACTCTTGACACTCAAAGGGGGGCTCACCAAGTAACTCTGATTAACACCCCTCTAGTGCTATCTGATAGGAGCGTTATCTATGATAGGAGCGTTATCTATGAGGAGGAACTTTCAAGGTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGATTGCAACGGGAACTTGAAGTGCAAGAGAAAAGAATTAGAAAAGAACTTGTAAAACAGGATATTCTAAGACAAAAGAGAGAGGAGCAAATAAAGAAAGATATGGAGAGGGAAGAACGTGAAAGGCAGAAGGAAAAGGAAAGGTACCTTAGAGAACAGAAGCGCGAGCAAGAGCGACAGGAAAAGTTTTTGCAGAAGGAATCAATCAGAGCTGAGAAACTGAAACAGAAGGAAGAACTACAGAGGGTGAAGGAGGTGGCAAGGATTAAAGCTGCAAGTGAGAGAGCTATTGCCCGCAGAATGGTAAAAGATGCAATAGACCTTATTGAAGATGAACTTCTGGAACTCATGGAATTAGCTGCATCAAAGAAGGGGCTATCTTCAATACTGGCTCTTGACTATGAAACTATGCAAAATCTTGAATCATACAGAGATGGGCGTACTTCCTTCCCACCCAAGTCTGTACAGTTGAAAAGAGCTTTTTCAATTCAACCTTGGGCAGATTCTGACGAAAATGTTGGAAATCTTCTGATGGTTTGGAAGTTCTTGATTACCTTTGCTGATGTTTTTGGAATATGGCCATTTACATTGGATGAGCTTATACAAGCTTTTCATGATTATGACCCTAGGTTGTTAGGTGAGATCCATATTGCTCTTCTGAGATCCATTATAAAAGATATTGAAGATTTTGCAAGAACACCCACTACTGGATTAGGAGCTAACCAAAATAGTGTTACGAACTCTGGTGGGGGGCGTCCACAGATAGTTGAAGGGGCATATGCATGGGGTTTTGATATAAGAAATTGGCAGCGGCATTTAAATCCGTTAACATGGCCAGAGATTTTGCGACAATTTGCATTGTCAGCTGGATTTGGGCCTCAATTGAAGAAACAGAATATTGAGCCATTGCATCCTAGCAACCATGAGGGTAATGATAGTAAAGATATAATTTCTAGTCTACGAAATGGAGCTGCTGTTGAAAATGCGGTTGCTATTATGCAAGGGAAAGGTTTATCTAATCCAAGAAGAAATAGGCATCGTTTGACGCCTGGAACTGTTAAATATGCTGCATTTCATGTGCTTTCTTTGGAAGGAAGCAGAGGCCTCAATATATTGGAAGTTGCAGACAAGATTCAGAAATCTGGACTACGTGATCTTACAACTAGCAAAACACCAGAGGCTTCTATATCTTCTGCTTTGTCTAGGGATACAGAACTATTTGAAAAGACAGCTCCTTCAACATATTGTGTACGTCCTGCATACAGAAAGGACCCAGCTGATTCTGAAGCAATTTATTCAGCTGCCAGGGAAAGAATCAGGATATTCAAAAGTGGGTTCGTGGGTGCAGAAGAAGCTGATGATGGTGAAAGGGATGAAGAATGTGAAACTGATGTGGCAAAAAATCCTGAGAATGATAAATTAAGAGTTCAAACAAATATGAAAAAGAAGGTCTCAAGTCATGAGGAATTTAATGCAAACACTATTGTGAGAAGTGGGAAGGACAATGGCGAGGTTTTGCAAACTCCTGATAGTTGCCATGAGAAAGTGGATTACGGGTTAGGATCAACTGCTGATGGAGGCTTCAACGAGCAGAAAGATGTTTGTAGATCTAGTGAAATTGCTGTTTGCAGCAATGGCGTTGCTAATCCTATTCTAAAAGGCATAGATGTTGATGAAAGCACTCTTGGTGAACCATGGGTACAAGGGCTTATGGAGGGAGAGTACTCAGATCTTAGTGTAGAGGAGCGTCTTCACGCTCTTGTTGCTTTGATTACTGTGGCAATTGAAGGGAATTCTATTCGTGTTGCACTTGAGGAACGTCTAGAAGCCGCAAATGCTTTAAAGAAGCAGATGTGGGCTGAGGCACAACTTGATAAACGCCGTATTAAAGAGGATTATTTTGTTAAAATTCCATCTTTCTCAAATTTGGGAAACAAGAGTGAACCAGCTGTTACATTTCCATCAGTAAGGGGTAAAGAGTGCCCAGTGCATATTGTTGAAGTTGAAAATGAGAAGGCTTTACTCACTCCCTGTGACCAGCATGAACAGATAAATTCACTGCAGGAAAATCAAAATCATCTGCAGAATTCATTAGAAGCGAACTTGCAGAGGCTAGATTGTTCCACTGGCCCAGACAATTATTCTCTTCAACGATCTATTTACGCTGCTGAAAAATCAAGGTCGGGTTTTAAATCATATATTGGTCAATTGGGGGAACAAACTTTCATGTGTAGATCATTGCCTCTCGGTTTGGATCGAAGACGAAACCGATACTGGCAATTGATCACTTCTGCTTCTCAAAGCGATCCAGGTTGTGGCAGGATTTTTGTGGAATTGCATGATGGCTGTTGGAAGCTGATTGATTCTGGAGAGGGTTTTGATGCTCTATTGGCATCATTGGATGTACGTGGAATCAAGGAGTCCCACTTGCATATGATGTTGCAAAGAATTGAGATATCCTTCAAAGAATCTGTTAGAAGAAATGTCCAAAATGAAATGAAGATGCAAAATGGAGACACTGTCGAAAAACTCAAGACAGAAGCAGTTGAAATGGCCACAGACGAAGATTGCGGTACTAATATTTACTGTCCTACTTCTGTCTGCATGGTTGATTTGAACACATCAGTGGCCTCTACATCTTTTACGGTTCAGCTTGGGAGAAATGAAGTTGAGAACAAAGATGCTTATATGAGATATTGGGACTTTGAGAAATGGATGCGAAACGAATGTCTAAATAGCTCAGTATCATGTGCAATGAAGTTTGGGAAGAGAAGGTGCAACGAACTACTTCTCATGTGTGATTTGTGCCATCATGTCTATTTCTTTAGAGGAACACCATGTCCTTCATGCCATATTGCTCGTTCTGAAGACAAAATGAAGACCGGCCCTCATTTTTTTCTTGATTCATCCTCTTCTCCATTGAGGATGAGATTGCTCAAAATCCTCTTGTCAGTTGTTGAGGCATCTCTTCCTCAAGAAGTTCTTCAACCTTTTTGGACAGAGAGGTACAGGAAGTCCTGGGGTTCAAAGCTGGAAGATTCATCATCAACTGAAGACATTCTGCAGATGTTGACTACATTGGAATGTGCTACAAAAAGGGAGTATTTGGCTTCAGACTACGAAACTACCAGTGAGCTGTTAGGTTCTGTTTGCTCTCCTGGATGTCATCCTAATGATATCATTGGTAGTGAAAGGATACCTGTGCTTCCATGGGTGCCATGTACAACTGCTGCTTTGACACTAAGGCTCATGGAACTCGATGCATGCATCTTTTACACTTCACAACAAAAGCTAGAGTCCGAGAAGGATAAACAAATTGGAATTGTTATAAAGCTTCCATCAAAATCTGCTGCTGTCAAAATTTCCTACAATGCTGGTGCGACTGAATCTTCATTACAGGCTAAGCATACTGTAGAGAACTGGGGTGCTCTTGGTGCTGGCCTCGAGAGCTACAGCAGAGGACAAAGGACTCGGCAAGGCAGCAACCACTCTCATGGTCAAAGATCACAGGGAAGAGTTGCTAGTTCAAGACCCACTTCCAGAAAGAGAAGCACTACATCCAACAGCAGGAGAATAGGAAAATTACATGGATGGAAAGGGACACCGTACACACAAGGACGCGTTCGTGGTCGGAGGAGCATTAGAAGCAGGCAGAAACCAGCAGCCAAGATGAATGTGATTAATGATGAGAGAGATACCACAAAAGACATCATGGAGAAAACACCAATCTTTGTCAGAGAGGAAATTAATGAAGACGAAACAGAAGCCAATGTTCTAAATGGTAGCAATTCGGAAAGATCAGACTATGAAGGTGGTCTTTGTCGAGCAACAGGAGATGAGTGTGATTATTTGTTAGATAATAACAATGATGGATATCGGGGTGGATTTAGTGGGAAATCTGAGAATCTAATTGAACAGAGCCACTATAATGTAGATGATGAGGAAGATGTGGATATGGATGATGATGTCGATGATGACATCGAAGATGGGCAGGCGGATCTTGATGTTCCAGATTATATAATTGGCGGGGACTCAAATGCAGGGTACAGTAGAGAAGAAAATGCAGAGAAAACTGAGGGTCCAGATGGTGTTGGTTCTACATCATTTGGTGTTGGTTCTACATCATTTGATTGCAGTGATTAA 5208 0.4222 MEGCFQGEENKVKRKMKSASQLEILEKAYAAELYPSEALRAELSVKLDLSDRQLQMWFCHRRVKDRKVSPMINKAAAPSLAPMGEEGVEQIAVADDVMHDSGLVSILRPIGHVDAQRVVTQYGVMESSSYHEAHQTLQELRAVALVERQLGETLREDGPILGMEFDSLPPGAFGAPLGAVAMGQNSQSEWPVEAKVYEHLDKGISRTLHEYQFIPEQPTVRNEIYERDTTSVHFSSLDGVPHSSGLSFLNGNESAPKVYGVQGQKIPGLNLLSESQQGRPNHLMLSASGGNDDVPRKNPSTPFVDVTLDTQRGAHQVTLINTPLVLSDRSVIYDRSVIYEEELSRFQRKRKNEEARLQRELEVQEKRIRKELVKQDILRQKREEQIKKDMEREERERQKEKERYLREQKREQERQEKFLQKESIRAEKLKQKEELQRVKEVARIKAASERAIARRMVKDAIDLIEDELLELMELAASKKGLSSILALDYETMQNLESYRDGRTSFPPKSVQLKRAFSIQPWADSDENVGNLLMVWKFLITFADVFGIWPFTLDELIQAFHDYDPRLLGEIHIALLRSIIKDIEDFARTPTTGLGANQNSVTNSGGGRPQIVEGAYAWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKQNIEPLHPSNHEGNDSKDIISSLRNGAAVENAVAIMQGKGLSNPRRNRHRLTPGTVKYAAFHVLSLEGSRGLNILEVADKIQKSGLRDLTTSKTPEASISSALSRDTELFEKTAPSTYCVRPAYRKDPADSEAIYSAARERIRIFKSGFVGAEEADDGERDEECETDVAKNPENDKLRVQTNMKKKVSSHEEFNANTIVRSGKDNGEVLQTPDSCHEKVDYGLGSTADGGFNEQKDVCRSSEIAVCSNGVANPILKGIDVDESTLGEPWVQGLMEGEYSDLSVEERLHALVALITVAIEGNSIRVALEERLEAANALKKQMWAEAQLDKRRIKEDYFVKIPSFSNLGNKSEPAVTFPSVRGKECPVHIVEVENEKALLTPCDQHEQINSLQENQNHLQNSLEANLQRLDCSTGPDNYSLQRSIYAAEKSRSGFKSYIGQLGEQTFMCRSLPLGLDRRRNRYWQLITSASQSDPGCGRIFVELHDGCWKLIDSGEGFDALLASLDVRGIKESHLHMMLQRIEISFKESVRRNVQNEMKMQNGDTVEKLKTEAVEMATDEDCGTNIYCPTSVCMVDLNTSVASTSFTVQLGRNEVENKDAYMRYWDFEKWMRNECLNSSVSCAMKFGKRRCNELLLMCDLCHHVYFFRGTPCPSCHIARSEDKMKTGPHFFLDSSSSPLRMRLLKILLSVVEASLPQEVLQPFWTERYRKSWGSKLEDSSSTEDILQMLTTLECATKREYLASDYETTSELLGSVCSPGCHPNDIIGSERIPVLPWVPCTTAALTLRLMELDACIFYTSQQKLESEKDKQIGIVIKLPSKSAAVKISYNAGATESSLQAKHTVENWGALGAGLESYSRGQRTRQGSNHSHGQRSQGRVASSRPTSRKRSTTSNSRRIGKLHGWKGTPYTQGRVRGRRSIRSRQKPAAKMNVINDERDTTKDIMEKTPIFVREEINEDETEANVLNGSNSERSDYEGGLCRATGDECDYLLDNNNDGYRGGFSGKSENLIEQSHYNVDDEEDVDMDDDVDDDIEDGQADLDVPDYIIGGDSNAGYSREENAEKTEGPDGVGSTSFGVGSTSFDCSD* 1736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3842 1735 SMART testlast3 525 584 IPR018501 -
Psa7g3842 1735 MobiDBLite consensus disorder prediction 1507 1547 - -
Psa7g3842 1735 Coils Coil 381 415 - -
Psa7g3842 1735 Pfam Homeodomain 13 67 IPR001356 GO:0003677
Psa7g3842 1735 Gene3D - 6 71 - -
Psa7g3842 1735 SMART HOX_1 10 72 IPR001356 GO:0003677
Psa7g3842 1735 Coils Coil 336 374 - -
Psa7g3842 1735 ProSiteProfiles HARE-type HTH domain profile. 706 775 IPR007759 GO:0006355
Psa7g3842 1735 Coils Coil 1039 1059 - -
Psa7g3842 1735 CDD homeodomain 11 67 IPR001356 GO:0003677
Psa7g3842 1735 ProSiteProfiles 'Homeobox' domain profile. 8 68 IPR001356 GO:0003677
Psa7g3842 1735 Pfam DDT domain 526 581 IPR018501 -
Psa7g3842 1735 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1100 1172 IPR028941 -
Psa7g3842 1735 Coils Coil 421 441 - -
Psa7g3842 1735 MobiDBLite consensus disorder prediction 1506 1554 - -
Psa7g3842 1735 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 919 957 IPR028942 -
Psa7g3842 1735 MobiDBLite consensus disorder prediction 1684 1735 - -
Psa7g3842 1735 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 8 1715 - -
Psa7g3842 1735 Pfam HB1, ASXL, restriction endonuclease HTH domain 706 773 IPR007759 GO:0006355
Psa7g3842 1735 ProSiteProfiles DDT domain profile. 525 584 IPR018501 -
Psa7g3842 1735 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 8 1715 IPR044977 GO:0006357
Psa7g3842 1735 SUPERFAMILY Homeodomain-like 9 68 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3842 Psa-Chr7 320441676 320456638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3842 2 1460 Homeobox Transcription Factor Family AT5G44180 48.469 0.0 1271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Psa7g3842 WSD 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3842 - - gmx:100797480 2165.58