Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa7g3841 | ATGGGTGTAGACTACTACAAAATCTTGCAGGTTGATAAGAATGCCAAAGACGAAGAATTGAAGAAGGCTTATAGAAAACTTGCCATGAAATGGCACCCTGATAAAAACCCAACCAACAAGAAAGATGCAGAAGCTAAGTTCAAGCAAATTTCTGAAGCTTATGAGGTACTTAGTGATCCTGAAAAGAGAGCAATCTATGACCAATATGGGGAAGAGGGTTTGAAGGGTCAAGCTCCTCCTACTGATGCTGGTAGTGGCGGTGGAGCTAGTTTCTATTCCACAGGAGATATTCCTGGATCGTTTCGGTTCAATCCGAGGAATGCAGATGAGATTTTTGCTGAGTTTTTTGGATTCTCAAGCCCATTTGGTGGCATGGGTGGAAGAGGTGGCAGTGGTGGGGGTGGCGGCGGCATGAGATCTAGGGTCCTTGGTGGAATGTTTGGTGATGATATGTTTGGATCTTTTGGGGAAGGAGGAGGAGGAATGCATATGAATCATGGTGTACCGAGGAAAGCTGCTGCTATCGAGAACAAGTTGAGTTGCACTCTTGAGGAGATTTATAAAGGAACTACAAAGAAGATGAAGATCTCTAGAGAAATAGCTGATGCCAGTGGCAAAACCATGCCAGTGGAAGAGATATTGACCATAATTGTGAAGCCTGGTTGGAAGAAAGGCACAAAGATCACCTTCCCAGAAAAGGGCAACGAGCAGCCGAATGTAACCGCCGCAGATCTTGTATTTGTGATCGACGAAAGGCCGCACAGTGTGTTCAGTCGCGAAGGAAACGACCTGATTGTGACTCAGAAGATATCTCTTGTGGAGGCGTTAACTGGTTATACAGTGCACCTCACTACACTGGATGGTAGAAACTTGAGCATACCAATAAACAATGTTATTCATCCCAACTATGAGGAGGTTGTTCCAAAAGAAGGGATGCCACTTCCTAAGGATCCATCAAAGAAGGGGAATTTGAGGATAAAGTTTAACATTAAGTTTCCAAGTCGGCTCACTGATGAGCAAAAAGTAGGAGTTAGGAAACTCTTGGGTGCAATCTGA | 1056 | 0.4441 | MGVDYYKILQVDKNAKDEELKKAYRKLAMKWHPDKNPTNKKDAEAKFKQISEAYEVLSDPEKRAIYDQYGEEGLKGQAPPTDAGSGGGASFYSTGDIPGSFRFNPRNADEIFAEFFGFSSPFGGMGGRGGSGGGGGGMRSRVLGGMFGDDMFGSFGEGGGGMHMNHGVPRKAAAIENKLSCTLEEIYKGTTKKMKISREIADASGKTMPVEEILTIIVKPGWKKGTKITFPEKGNEQPNVTAADLVFVIDERPHSVFSREGNDLIVTQKISLVEALTGYTVHLTTLDGRNLSIPINNVIHPNYEEVVPKEGMPLPKDPSKKGNLRIKFNIKFPSRLTDEQKVGVRKLLGAI* | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa7g3841 | 351 | Pfam | DnaJ C terminal domain | 175 | 333 | IPR002939 | - | |
| Psa7g3841 | 351 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Psa7g3841 | 351 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Psa7g3841 | 351 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Psa7g3841 | 351 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Psa7g3841 | 351 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Psa7g3841 | 351 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Psa7g3841 | 351 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 256 | 341 | IPR008971 | GO:0006457|GO:0051082 | |
| Psa7g3841 | 351 | Gene3D | DnaJ domain | 3 | 126 | IPR036869 | - | |
| Psa7g3841 | 351 | Gene3D | - | 254 | 334 | - | - | |
| Psa7g3841 | 351 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 349 | - | - | |
| Psa7g3841 | 351 | SUPERFAMILY | Chaperone J-domain | 3 | 75 | IPR036869 | - | |
| Psa7g3841 | 351 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - | |
| Psa7g3841 | 351 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - | |
| Psa7g3841 | 351 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 169 | 260 | IPR008971 | GO:0006457|GO:0051082 | |
| Psa7g3841 | 351 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - | |
| Psa7g3841 | 351 | PANTHER | DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE | 1 | 349 | - | - | |
| Psa7g3841 | 351 | CDD | DnaJ_C | 175 | 336 | - | - | |
| Psa7g3841 | 351 | Gene3D | - | 173 | 252 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa7g3841 | Psa-Chr7 | 320405385 | 320407161 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa7g3841 | 5 | 69 | C2H2 Transcription Factor Family | AT1G74250 | 39.130 | 1.01e-09 | 58.2 |