Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3827 ATGGGAGGCTTCATGTTAGGTTCGAAGAAGAAGAAAAACAATAAAAGCCAAGGCGGTTTTGAAACTATGGGTTTGAATCCCAATGTGTTCAGGGGAGTGAGGCGTAAGGGTTACAAAGTGCCGACTCCAATTCAGAGGAAGACGATGCCGCTAATCCTCTCCGGCGTCGATGTTGTTGCCATGGCTCGTACTGGTTCTGGCAAAACGGCTGCGTTTCTCGTTCCCATGCTTCATAAGCTTAATCAGCATCTTCCTCAGGCTGGCGTTAGAGGACTCATTTTATCACCGACTAGGGATTTGGCTCTTCAGACTCTCAAATTCACTCAAGAGCTTGGTCACTTCACAGACCTTCGTGTTAGTTTGTTGGTTGGCGGTGATAGTATGGAAAGTCAGTTCGTGGAGTTATCTCAGAGTCCAGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCCGAGGTTGATGACATGTCCTTGCGTAAGGTGGAGTATGTTGTTTTTGACGAGGCTGATTGTTTATTTGGTATGGGTTTTGCTGAGCAGCTACATCAGATTCTTGCTCAGCTTGGTGACAATCGTCAGACCTTGCTTTTCAGTGCCACACTACCTAGCGCTCTTGCAGAATTTGCTAAGGCTGGTCTGCGAGAACCTCGCCTTGTTCGACTTGATTTGGAAACTAAAATTAGCCCTGACTTGAAGCTTGTCTTTTTCACTTTGAGGCAAGAAGAAAAGTATGCTGCTTTGCTCTATTTAATTAGGGAACTTATTGGTTCCGATGAGCAGACTTTAATTTTTGTCTCTACTAAACATCATGTTGAGTTTCTCAACTCATTGTTTAAACAAGAGGGTATTGAGCCTTCGGTATGTTATGGAGATATGGATCAAGATGCTCGCAAAATGCATGTGTCCAGGTTTAGGTCAAGAAAGACAATGTTGTTGATTGTCACAGATATTGCTGCTCGAGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCTCGCCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGTTGCAAGGGCGGGTCGTACTGGTACCGCTTATTCGTTCTTGACTACTGAGGATATGGCGTATCTCTTGGATCTTCATTTGTTTCTCTCAAAACCAGTCAAAGCTGCCCCCACTGAAGAAGAGGTCTTGCAGGATATGGACGGGGTAATGTCAAGAATTGACCAGGCAATGGCAAATGGAGAAACCATTTATGGTCGTTTCCCTCAAAAAGTCATTGATCTTGTTTCTGACAGAGTCAGGGAAGTTATTGATACTAATGCGGAGCTGGAATCGTTACAGAGAACCTGTAAAAATGCATTTCGTTTATATTCTAAAACAAAACCCTTACCCTCTAAGGAGTCCATTCGAAGAGTAAAGGATTTGCCACCAGAAGGTCTCCATCCAATTTTTAACAGAGTGTTGGGGACGGGAGAGTTAACAGCACTTGCATTTTCTGAACATTTGAAAACGTTTAGGCCAAAGCAGACCATTTTGGAAGCGGAAGGAGAAGCAGCCAAAGCAAAGCGTAGAGCAGGCCCTTCTGGTAAATGGGTTGACGTGATGAAAAGGAAAAGAGCCATTCATGAATCTACCATAAATTTGTTTCTTGAACAGAAGTCTAAGAGTACTAGTGAGAAGGAGGAATTTCAACAGGAACCAACTTCAACGGGGAAAGGGAGAAAAGCAGCACGTGGTTCTAAGAGAAAGTTAGAAAGTTTCAAGGACGAGGATAACTATATAAGTTCCATACCTAAAAATCGTCACATGGAGGCAGGCCTTGCAGTAAAAGCTAATGAAGGCTTTTCTTCAAATAGATTGGAAGAAGCTGTCCTAGATCTAGTTGCAGATGATGGTACTGGCATTAAGAAACAAAAATCCGTGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTGAACAATGGTGACCGGGTCTCTGCAAGTGGAAAGATAAAAACAGAGAGTGGTGCAAAAACAAAGGCAAACAAGACTGGCATCTATAAAAAGTGGAAGGAACGCTCACATTCCAAGATATCTCTTAGAGGGACAAATACTGATGGTGATGCTCAGGAATCAACAAGTTCAAAAGGATCTTACCGAGGAGGTGGTAGGAATTTTAGAGACGGCAGGAAGCAGCATTCAGTGGCCAATGCTCATGTGCGTCCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAGAAAGCAAGCAAAATTTCTTATATGAAGAGTAAGTCGCCAAAGGGTAAAAAATCTGGCAGAAAGGGGGGCAATAAGGGCAATAAGGGCAATAAGGGGGGAAATAAAAGAAGAGGGGGTAAGTAA 2367 0.4297 MGGFMLGSKKKKNNKSQGGFETMGLNPNVFRGVRRKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLVPMLHKLNQHLPQAGVRGLILSPTRDLALQTLKFTQELGHFTDLRVSLLVGGDSMESQFVELSQSPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGDNRQTLLFSATLPSALAEFAKAGLREPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFKQEGIEPSVCYGDMDQDARKMHVSRFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFSPKPKIFVHRVGRVARAGRTGTAYSFLTTEDMAYLLDLHLFLSKPVKAAPTEEEVLQDMDGVMSRIDQAMANGETIYGRFPQKVIDLVSDRVREVIDTNAELESLQRTCKNAFRLYSKTKPLPSKESIRRVKDLPPEGLHPIFNRVLGTGELTALAFSEHLKTFRPKQTILEAEGEAAKAKRRAGPSGKWVDVMKRKRAIHESTINLFLEQKSKSTSEKEEFQQEPTSTGKGRKAARGSKRKLESFKDEDNYISSIPKNRHMEAGLAVKANEGFSSNRLEEAVLDLVADDGTGIKKQKSVYHWDKRSKKYIKLNNGDRVSASGKIKTESGAKTKANKTGIYKKWKERSHSKISLRGTNTDGDAQESTSSKGSYRGGGRNFRDGRKQHSVANAHVRPEIKDMDQIRKERQKKASKISYMKSKSPKGKKSGRKGGNKGNKGNKGGNKRRGGK* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3827 788 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Psa7g3827 788 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 9 784 - -
Psa7g3827 788 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Psa7g3827 788 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Psa7g3827 788 SMART ultradead3 37 237 IPR014001 -
Psa7g3827 788 Pfam DBP10CT (NUC160) domain 623 684 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Psa7g3827 788 MobiDBLite consensus disorder prediction 1 21 - -
Psa7g3827 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Psa7g3827 788 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 784 - -
Psa7g3827 788 Gene3D - 5 225 IPR027417 -
Psa7g3827 788 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Psa7g3827 788 CDD DEADc_DDX54 18 223 - -
Psa7g3827 788 SMART DBP10CT_2 623 685 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Psa7g3827 788 MobiDBLite consensus disorder prediction 677 691 - -
Psa7g3827 788 CDD SF2_C_DEAD 244 365 - -
Psa7g3827 788 MobiDBLite consensus disorder prediction 650 788 - -
Psa7g3827 788 Gene3D - 235 463 IPR027417 -
Psa7g3827 788 MobiDBLite consensus disorder prediction 692 712 - -
Psa7g3827 788 MobiDBLite consensus disorder prediction 658 672 - -
Psa7g3827 788 MobiDBLite consensus disorder prediction 753 788 - -
Psa7g3827 788 MobiDBLite consensus disorder prediction 715 752 - -
Psa7g3827 788 SMART helicmild6 271 356 IPR001650 -
Psa7g3827 788 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Psa7g3827 788 MobiDBLite consensus disorder prediction 551 580 - -
Psa7g3827 788 MobiDBLite consensus disorder prediction 551 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3827 Psa-Chr7 319684638 319692643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3827 20 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.989 5.41e-57 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3827 K14808 - gmx:100806274 1241.1