Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3824 GGGGTTTGGTGGGGGTTTTCCTTCCATCCGTTCTACAAAGTCGACATCAACAACTCTGACAGAAAATCATTTTCCACTCCACATCCCTCTCGTTACTTCTCCCGCGCCTTCTCCACTTCGTTCTCTCTGGTCTTCCACCAGAAAATCATTTTCCACTCCACATCCCTCTCGTTACTTCTCCCGCGCCTTCTCCGCCGCTCCCGCCGCCGCCTCCTCTTCCGATCCCACCGGATCCCTCGACCCCGCCCGCCTCCGCAACGTCGCTGTGATAGCTCATGTCGACCACGGTAAGACAACGCTCATGGACCGTCTGCTCCGCCAGTGCGGCGCTGATATCCCGCACGAGCGCGCCATGGATTCCATTACTCTCGAACGCGAGCGCGGCATCACTATCTCTTCCAAGGTTACTTCTATTGCGTGGAAAGAAAATGAGCTCAACATGGTGGATACTCCTGGACATGCTGATTTTGGCGGCGAGGTTGAACGTGTAGTTGGTATGGTTGAGGGGGCAGTTTTGGTTGTTGATGCTGGAGAAGGTCCTCTTGCCCAAACTAAGTTTGTTCTTGCGAAAGCCTTAAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGGCCTGCAGTTACTGAGGAGATCTGTGACGAGGTTGAGAGTCTGGTGTTTGATCTATTTGCGAACTTGGGTGCTACAGAGGAGCAACTTGACTTCCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTATACAAAAGACCCTCCTGCTGAGGCCAAAAATATGTCACAGTTGCTTGATGCCATCGTAACTCATGTTCCTCCACCAAATGCAAACATTGACGCACCTTTCCAAATGCTGGTTTCAATGATGGAGAAGGACTTTTATCTTGGGCGGATTTTAACTGGACGTGTGTATTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCACGGACTACGTAACAAAGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAGCCATGGTTGTAACGGATTGTGCTGGAGCTGGTGATATAATTTCAATTGCTGGTTTGTCAAGTCCATCTATCGGCCATACAGTCACTAGTGTGGAGATTATGTCTGCATTACCCACAGTTGAATTGGATCCACCAACAATTTCTATGACCTTTGGTGTAAACGACTCCCCATTAGCTGGCCGTGATGGTACTCATTTGACTGGCGGACGAATTGGTGATCGTTTATCGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTGTCAGAAACGTTTGAAGTTCAAGGAAGAGGAGAACTACAGCTGGGTATTTTAATTGAGAATATGAGGCGTGAGGGATTTGAGCTATCTGTCTCTCCACCTAAAGTCATGTATAAAACCGACAAAGGTCAGAAACTTGAGCCAATAGAAGAAGTTACAATCGAGGTAAATGATGAGCACGTTGGCTTTGTAATGGAGGCTTTGTCTCACAGACGAGCTGAGGTTACTGACATGGGTCCTGTTGCGGGAGCTATTGGTCGAACTAGATTGTCCTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTCAGCAGTGAGACACGTGGAACTGGGTTCATGCACCGTGCTTTCCTCACATATGAAAAATTTCGAGGCCCTCTTGGCAATGTGAGGAAAGGAGTACTGGTGTCAGTGGGTTATGGTCCAATCACATCTCATGCATTAATGAGCTTAGAAGCTCGTGGGACTCTTTTTGTATCTCCTGGAATGGAGACATATGATGGTATGATTGTTGGAGAACACTCAAGGGATACAGATCTTGATGTTAATCCAGTGAGGGCTAAACAACTTACAAATATACGCTCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCTCCTCGCCTCATGACACTTGAAGAAGCTATAGGATATGTAGCTTCAGATGAGCTTATCGAGGTTACTCCAAAGACCATTCGGTTACGGAAGAAATACCTTGATGCTAACAAGCGTAAAACCATGAGCAAAAAGCCAAAGGAATGA 2080 0.4736 GFGGGFPSIRSTKSTSTTLTENHFPLHIPLVTSPAPSPLRSLWSSTRKSFSTPHPSRYFSRAFSAAPAAASSSDPTGSLDPARLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSITLERERGITISSKVTSIAWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEEICDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTYTKDPPAEAKNMSQLLDAIVTHVPPPNANIDAPFQMLVSMMEKDFYLGRILTGRVYSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTAMVVTDCAGAGDIISIAGLSSPSIGHTVTSVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLSAEAETNLAINVLPGLSETFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTDKGQKLEPIEEVTIEVNDEHVGFVMEALSHRRAEVTDMGPVAGAIGRTRLSLTCPSRGLVGYRSVFSSETRGTGFMHRAFLTYEKFRGPLGNVRKGVLVSVGYGPITSHALMSLEARGTLFVSPGMETYDGMIVGEHSRDTDLDVNPVRAKQLTNIRSASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKTIRLRKKYLDANKRKTMSKKPKE* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3824 692 Pfam Elongation factor Tu domain 2 301 375 IPR004161 GO:0005525
Psa7g3824 692 CDD BipA_III 391 468 - -
Psa7g3824 692 SUPERFAMILY Translation proteins 229 384 IPR009000 -
Psa7g3824 692 CDD BipA_TypA_C 483 563 IPR035651 -
Psa7g3824 692 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 39 691 - -
Psa7g3824 692 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 84 684 IPR006298 GO:0005525
Psa7g3824 692 Gene3D - 82 280 IPR027417 -
Psa7g3824 692 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 119 134 IPR031157 -
Psa7g3824 692 Gene3D Translation factors 281 385 - -
Psa7g3824 692 Pfam Elongation factor Tu GTP binding domain 83 277 IPR000795 GO:0003924|GO:0005525
Psa7g3824 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 289 IPR027417 -
Psa7g3824 692 Pfam Elongation factor G C-terminus 481 564 IPR000640 -
Psa7g3824 692 Gene3D bipa protein 569 684 IPR042116 -
Psa7g3824 692 Gene3D Elongation Factor G (Translational Gtpase), domain 3 392 676 - -
Psa7g3824 692 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 82 280 IPR000795 GO:0003924|GO:0005525
Psa7g3824 692 PANTHER ELONGATION FACTOR FAMILY PROTEIN 39 691 - -
Psa7g3824 692 CDD BipA_TypA_II 287 384 - -
Psa7g3824 692 PRINTS GTP-binding elongation factor signature 146 156 IPR000795 GO:0003924|GO:0005525
Psa7g3824 692 PRINTS GTP-binding elongation factor signature 198 207 IPR000795 GO:0003924|GO:0005525
Psa7g3824 692 PRINTS GTP-binding elongation factor signature 126 134 IPR000795 GO:0003924|GO:0005525
Psa7g3824 692 PRINTS GTP-binding elongation factor signature 86 99 IPR000795 GO:0003924|GO:0005525
Psa7g3824 692 PRINTS GTP-binding elongation factor signature 162 173 IPR000795 GO:0003924|GO:0005525
Psa7g3824 692 Gene3D - 474 568 - -
Psa7g3824 692 SUPERFAMILY EF-G C-terminal domain-like 389 472 IPR035647 -
Psa7g3824 692 TIGRFAM small_GTP: small GTP-binding protein domain 85 220 IPR005225 GO:0005525
Psa7g3824 692 SUPERFAMILY EF-G C-terminal domain-like 483 599 IPR035647 -
Psa7g3824 692 CDD TypA_BipA 84 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3824 Psa-Chr7 319645317 319660231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3824 83 207 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 2.02e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3824 K06207 - gmx:100789218 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3824 7 319645317 319660231 Psa7g3824 7 319645317 319660231 ECH