Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3823 ATGAGGATGCAAGAAAGTCACAACAACAGCAACAACAACGTTGTTACACATCAAGCATGTTCAGCATGCAAACATCAAAGAAAAAAATGCAGTGATAACTGCACATTAGCACCGTATTTTCCATCAAACAAAAACAAAGAATTTCAAGCAGTTCACAAAGTTTTCGGAGTTAGCAACATAACAAAAATGGTAAAGAGTTGTGAAGAAACAGAAAGAAAAAGAGTAGTGGATTCATTGATTTGGGAAGCATTGTGTAGACAAAAAGATCCTATAAATGGTTCTCTTGGAGCATATAAAAAAGTTTACAATGAGTATAGAAAAGTATTTGAAGAACTTAGAATAATAAAAGAGCAAAATCAATTATTGCACATGCAAAGTAATCAAGGGTTAATATCAACCAAACCAATAAGTGATTCTAATGGAATGGATTATCATCTTCTTCATCAGAATAATGGTGTTGGTTCTTATACTTCTTATTATTCACATTATTTACAAGATTATGACAATTTGAGGACAGAAGTTGCTATTCCAATTCAGCAACACTCATCACAGAGTTTGAGGTGA 564 0.3245 MRMQESHNNSNNNVVTHQACSACKHQRKKCSDNCTLAPYFPSNKNKEFQAVHKVFGVSNITKMVKSCEETERKRVVDSLIWEALCRQKDPINGSLGAYKKVYNEYRKVFEELRIIKEQNQLLHMQSNQGLISTKPISDSNGMDYHLLHQNNGVGSYTSYYSHYLQDYDNLRTEVAIPIQQHSSQSLR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3823 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 151 - -
Psa7g3823 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 10 151 - -
Psa7g3823 187 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Psa7g3823 187 Pfam Lateral organ boundaries (LOB) domain 19 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3823 Psa-Chr7 319631535 319634627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3823 17 132 AS2 family AT1G06280 56.897 7.48e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa7g3823 LOB 5.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3823 - - vra:106780610 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3823 7 319631535 319634627 Psa7g3823 7 319631535 319634627 ECH