Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3813 ATGGAAGATTTTGATTGGGGTTATGATATACTTGGAGATGCCACTAATGGTTTTCAAGTAAACAATGGTGTTATTGGAAATGGGTATGGTTCATCTTTCTCTCTGGTTTTGGATAGAGAGAGAGGAATGCTTGTGGAAGCACCGGCTAAAATGGAACAAAAGGGTGTGTCTACTGAGAGAACCGCTGAAGCTTTGAAGAATCACAGTGATGCAGAGCGAAGAAGAAGAGCGAGAATTAATTCACATCTCGATACACTTCGCAGCGTCATTCCAGGTGCTTTGAAGATGGACAAAGCGTCATTACTCGGTGAAGTTATTCGACATTTAAAAGAGGTGAAAAGGAATGCAACACATGCTTGTGAAGGTTTAATGATACCAAAGGACGACGATGAAATAAGTGTTGAAGAACAAGAATGTGGATTCAATGGTTTTCGTTATTCAATTAAAGCATCATTATGTTGTGAGTATCAACCTGGTTTATTGTCTAGTATAAGACAAGCACTCGAGGCTCTTCGTCTCGTAATCATGAAGGCGGATATTGCGACTTTTGGTGGAAGAATGAAGAATGTGTTTGTTGTAATTAGCTGTGAGGAACAGAATTTTGATGATGCTGAATACAGACAGTTTCTTGCTGGTTCTGTTTACCAAGCTCTTAAGTCTGTGATTAATAGATTTTCTGTTTCACAGGATATGTTGGGAGCTAGAAAAAGAAGGAGAGTTTCTATATTTAGTTCTTCATCTTTGGAAGATTTCTTATAA 759 0.3834 MEDFDWGYDILGDATNGFQVNNGVIGNGYGSSFSLVLDRERGMLVEAPAKMEQKGVSTERTAEALKNHSDAERRRRARINSHLDTLRSVIPGALKMDKASLLGEVIRHLKEVKRNATHACEGLMIPKDDDEISVEEQECGFNGFRYSIKASLCCEYQPGLLSSIRQALEALRLVIMKADIATFGGRMKNVFVVISCEEQNFDDAEYRQFLAGSVYQALKSVINRFSVSQDMLGARKRRRVSIFSSSSLEDFL* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3813 252 SMART finulus 69 118 IPR011598 GO:0046983
Psa7g3813 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 114 IPR036638 GO:0046983
Psa7g3813 252 CDD ACT_UUR-ACR-like 151 193 - -
Psa7g3813 252 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 251 - -
Psa7g3813 252 MobiDBLite consensus disorder prediction 53 74 - -
Psa7g3813 252 CDD bHLH_AtAIG1_like 58 134 - -
Psa7g3813 252 PANTHER TRANSCRIPTION FACTOR BHLH30 14 251 IPR045847 GO:0003700|GO:0006355
Psa7g3813 252 Pfam Helix-loop-helix DNA-binding domain 67 111 IPR011598 GO:0046983
Psa7g3813 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Psa7g3813 252 MobiDBLite consensus disorder prediction 56 74 - -
Psa7g3813 252 Gene3D - 57 120 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3813 Psa-Chr7 319028069 319029755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3813 50 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.857 3.89e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g3813 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3813 - - aprc:113859663 391.734